Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1072
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831...    31   0.69 
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903...    29   4.9  
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114...    28   8.5  

>06_03_1473 -
           30382528-30382731,30382814-30382930,30383048-30383129,
           30383211-30383278,30383444-30383545,30383994-30384122,
           30384561-30384623,30384781-30384897,30385210-30386116,
           30386225-30386494,30386929-30386998,30387114-30387273
          Length = 762

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -2

Query: 713 KYINIMFVFDRSFNVH*KDYSFSDAT*MVKLALSEVFAKRKPI*HHRGNLWFM 555
           KYIN M  FD++ N   +++SF  ++   K  +S++  K K I   RG+L F+
Sbjct: 569 KYINYMNAFDQAMNALEEEFSFLSSS---KQIVSDMNEKDKVIVFERGDLVFV 618


>07_01_1180 -
           11188789-11188797,11189032-11189068,11190328-11190392,
           11190464-11190562,11190707-11190878,11190973-11191325,
           11191451-11191561,11191637-11191708,11192203-11192420,
           11192546-11192594,11192697-11192750,11192876-11192958,
           11193088-11193304,11193387-11193510,11194042-11194105,
           11194413-11194500,11194623-11194724,11194842-11194937
          Length = 670

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 601 RSENPFSTTGEIFGS*HLESCIHVCDLLFFSLDLN--VFIVA-NVKPRRLSLG 452
           RS   FS   + F    L   +H CDLLFF +  N   F+ A ++K +R   G
Sbjct: 608 RSATNFSVVKKCFDGASLARPVHSCDLLFFPIVKNRHWFVFAIDLKAQRFDYG 660


>05_01_0166 +
           1145829-1145971,1146211-1146235,1147330-1147425,
           1147544-1147645,1147767-1147889,1147996-1148622,
           1148710-1148883,1148965-1149181,1149312-1149394,
           1149478-1149573,1149676-1149724,1149850-1150088,
           1150547-1150618,1150694-1150804,1150930-1151282,
           1151377-1151464,1151691-1151789,1151860-1151991,
           1152119-1152222,1153179-1153215,1153334-1153367,
           1153451-1153467
          Length = 1006

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 601 RSENPFSTTGEIFGS*HLESCIHVCDLLFFSLDLN 497
           RS   FS   + F    L   +H CDLLFF +  N
Sbjct: 873 RSATNFSVVKKCFDGASLARPVHSCDLLFFPIVKN 907


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,057
Number of Sequences: 37544
Number of extensions: 239435
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)