Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1067
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   135   2e-33
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   4.8  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   6.4  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    24   8.5  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  135 bits (327), Expect = 2e-33
 Identities = 58/83 (69%), Positives = 68/83 (81%)
 Frame = +3

Query: 18  MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 197
           M LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 198 TILCQPTGGRARLTEGCSFEENN 266
           ++LCQPTGG+ARL EGCSF   N
Sbjct: 61  SVLCQPTGGKARLMEGCSFRRKN 83


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +3

Query: 132 GCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFEENNI 269
           GC  +  + SH Q   V  G   ++  P+  +    +  +FEE  +
Sbjct: 180 GCKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEV 225


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 179 HHSLCVTKNCCNLVTARALNIHEIRVRMW 93
           +H+L   ++ C L  ++ L+ H I +R W
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKW 65


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 279 VLDRALFNFKIFFPIV*WSDIFQVHYNGSIWALQI 383
           VL+ AL NF         SDIF++ YN  ++ +++
Sbjct: 153 VLENALRNFSTLTK----SDIFEILYNDQVYQIKV 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,227
Number of Sequences: 5004
Number of extensions: 28550
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)