Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1067
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.81 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.81 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   4.3  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   5.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -3

Query: 294  GLCPGLKC*CCFLQKNILQLI*HGHQWVDKGS----LSIQRRP 178
            G  PG+     FL  N   L+   H W D G      +IQ RP
Sbjct: 1496 GQAPGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYFTIQYRP 1538


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -3

Query: 294  GLCPGLKC*CCFLQKNILQLI*HGHQWVDKGS----LSIQRRP 178
            G  PG+     FL  N   L+   H W D G      +IQ RP
Sbjct: 1492 GQAPGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYFTIQYRP 1534


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 155 F*SRTESGGLRWMLNDPLSTHWW 223
           F  R  +G  +W++N+     WW
Sbjct: 24  FLKRPITGDEKWVVNNIKRKRWW 46


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 179 HHSLCVTKNCCN 144
           HH + + KN CN
Sbjct: 24  HHKILIKKNKCN 35


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 309 IFFPIV*WSDIFQVHYNGSIWA 374
           + F ++  +  F V YN ++WA
Sbjct: 108 VLFRLLYSAKTFDVFYNTAVWA 129


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 309 IFFPIV*WSDIFQVHYNGSIWA 374
           + F ++  +  F V YN ++WA
Sbjct: 108 VLFRLLYSAKTFDVFYNTAVWA 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,327
Number of Sequences: 438
Number of extensions: 1867
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)