Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1066
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   2.2  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   2.9  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    26   3.9  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   3.9  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   9.0  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   9.0  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    25   9.0  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 488 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK--LLDQGKIPTDMFNSSDTMPSRLML 315
           F+  VNP ++  TR +       ++SLPMA  Y    L   +    +    +  P   + 
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFTLTGDDNLFPEGGLR 317

Query: 314 PKGTYDG 294
           P  T DG
Sbjct: 318 PANTIDG 324


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 494 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 393
           DW + K+ P   ++T    D  FF  +  P   +
Sbjct: 82  DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +3

Query: 273 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 407
           +K L G       R+   RRH V       G+  ++RN S+ + L+D  +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 237 EPFKSVVPDNKPFGYPFDRPVLP 169
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 520 DNWMTSTS-LTGSCKRLTLASLR*RVHLLTLHSSKKTLYRWPKSTSSWTKERFL 362
           DN+++  S + GS +RL  +       +  L S  KTL   P STSS TKE  L
Sbjct: 818 DNYLSKLSNIAGSSRRLKNSRA-----ISFLSSYLKTLESTPMSTSSPTKEEKL 866


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 503  YELDWFVQKVNPGQSQITRSSTDF 432
            Y  DW    ++   SQ+ R ST+F
Sbjct: 1123 YSFDWEAYMIDISSSQLKRKSTEF 1146


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 221 TDLNG-SDSLGVVHTDRRIQTAGRGIHRMY 307
           T  NG S S G  HT RR QT+G+  H+ Y
Sbjct: 67  TSQNGTSGSSG--HTKRRSQTSGKKTHQPY 94


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 288 LPAVCIRLSV*TTPKESEPFKSVVPDNKPFGYP---FDRPVLPQYFKQ 154
           L  V I L   T PK +E F+++    K FGY    F R V+P +  Q
Sbjct: 40  LGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHR-VIPNFMIQ 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,634
Number of Sequences: 5004
Number of extensions: 51863
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)