Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1066
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1599 - 38539460-38539480,38539973-38540054,38540185-385402...    29   2.3  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   4.0  
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    28   7.0  
09_02_0389 - 8456957-8459917,8461941-8462267                           27   9.2  
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856     27   9.2  

>01_06_1599 -
           38539460-38539480,38539973-38540054,38540185-38540255,
           38540359-38540489,38550539-38550614,38551229-38551588
          Length = 246

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 489 PVKLVEVIQLSSRLKGKPFSSYLGPRN 569
           PV+L++++ L S ++GK     +GP N
Sbjct: 158 PVELLQILPLKSTIRGKDIGPQIGPNN 184


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 261 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 389
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 292 NPSYVPLGSISLEGIVSEELNMSVGIFPW 378
           N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 42  NGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 511 MTSTSLTGSCKRLTLASLR*RVHLLTLHSSKKTLYRWPKSTSSWTKERFLL 359
           + S  LTG+C R    SL    HL  L+ S   +   P+S  S +  +FL+
Sbjct: 554 LRSLDLTGTCIRYIPKSLEHLHHLRLLNLSLTQVLELPESIESLSNLQFLI 604


>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
          Length = 1002

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 277 NSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPWSKSL*ISAIGKESSLKNA 432
           NS +GNPS  P G  +L   V +  +++ G  P S S  + + G  S ++ A
Sbjct: 658 NSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIA 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,348
Number of Sequences: 37544
Number of extensions: 311256
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)