Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1066
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0) 29 3.1
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 29 4.1
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 28 5.4
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7) 28 5.4
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 28 5.4
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1) 28 7.1
SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_30902| Best HMM Match : Lac_bphage_repr (HMM E-Value=3.5) 27 9.4
SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13) 27 9.4
SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2) 27 9.4
>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 1329
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = -2
Query: 273 IRLSV*TTPKESEPFKSVVPDNKPFGY------PFDRPVLPQYFKQPNMFFKKVLVYHEG 112
I L ++P+ SEP S VP+ + Y P P + + QP M F + Y G
Sbjct: 591 ITLGTMSSPRSSEPLGSQVPNLQEQMYQAFQFNPMRAPYMGSWHSQPPMHFPQNEPYLSG 650
Query: 111 ELFPYLFNIPHYTPD 67
FP ++P T +
Sbjct: 651 H-FPGHHSLPRMTQE 664
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = -3
Query: 218 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR 39
+ T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L
Sbjct: 76 YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-- 130
Query: 38 KSKRTLTIT 12
SK LT++
Sbjct: 131 -SKNYLTLS 138
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/54 (22%), Positives = 34/54 (62%)
Frame = -3
Query: 218 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 57
+ T + ++++++ +L+ S L + ++ ST+++NYS + +LT+ +I ++
Sbjct: 155 YLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208
>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 736
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = -3
Query: 500 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSS 342
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 404 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSS 462
>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
Length = 359
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = -3
Query: 500 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSS 342
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 255 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSS 313
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = -3
Query: 500 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSS 342
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 490 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSS 548
>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
Length = 355
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 200 SVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR-KSKRT 24
S+ AP L+T+NN TC+ R+ + PI + +L H K+ L + K T
Sbjct: 19 SITTEDAPTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKAT 76
Query: 23 LTITVYN 3
T+ YN
Sbjct: 77 ATMWHYN 83
>SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 488 TSQARRSHPVIF*AEGKAVLIVFRSKEHLDDGVS 589
TSQ R P IF E K + +S E +DG+S
Sbjct: 19 TSQQRELSPTIFLPESKVPANIKKSSETWEDGIS 52
>SB_30902| Best HMM Match : Lac_bphage_repr (HMM E-Value=3.5)
Length = 240
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 502 TSLTGSCKRLTLASLR*RVH-LLTLHSSKK 416
TSLTGS K+ L+ L ++H LLTL+S K
Sbjct: 211 TSLTGSNKKTLLSQLPDKLHDLLTLNSRDK 240
>SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)
Length = 553
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 162 FKQPNMFFKKVLVYHEGELFPY 97
FKQ N++ VLV +G+L+PY
Sbjct: 99 FKQVNVWVNGVLVKAQGDLYPY 120
>SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2)
Length = 116
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 210 NKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTP 70
N F + DRP+L +QP K ++ G + Y F +P +P
Sbjct: 24 NSNFAFISDRPILEYIARQPEYCGKLKVIGGFGSTYGYGFALPLNSP 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,362,582
Number of Sequences: 59808
Number of extensions: 368677
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -