Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1066
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    33   0.17 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   6.3  
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = -3

Query: 341 DTMPSRLMLPKGTYDGFPFQLFVFVYPYEXXXXXXXXXXXLFRTTNHSVIHSIAPFFLST 162
           D   +R+ LPK T D    + F   YP             ++ + NH ++ +  P  LS 
Sbjct: 282 DREVNRIFLPKYTDDDSYVEYFELPYPKAGVQNNTLVTQYIWDSENHKIVETAPPNELSA 341

Query: 161 SNNLTCSSRRSWSTMKENYSPI 96
           +N         W TM  N S +
Sbjct: 342 ANGDYYVLTNKWITMPRNGSDL 363


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 252 TPK-ESEPFKSVVPDNKPFGYPFDRPV-LPQYFKQPNMFFKKVLVYHEGELFPYLFNIPH 79
           TPK +SEPF   +P +KP   PF  P+  P+   +P     K +  H+ + FP     P 
Sbjct: 9   TPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKP-KPKPMPKHKPKPFPKPMLFPK 67

Query: 78  YTP 70
             P
Sbjct: 68  PMP 70


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 252 TPKESEPFKSVVPDNKPFGYPFDRPVLPQ 166
           TPK  +  +  VP N+P    F RPV+P+
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPK 156


>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 255 TTPKESEPFKS-VVPDNKPFGYPFDRPVLPQYFKQ 154
           TTP+ S   KS +V D  P GYP  R    +  KQ
Sbjct: 125 TTPEYSSRIKSLIVEDMSPLGYPLKRAEYLECIKQ 159


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 126 VYHEGELFPYLFNIPHYTPDK 64
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
 Frame = -2

Query: 246 KESEPFKSVVPDN----KPFGYPFD-------RPVLPQYFKQPNMFFKKV--LVYHEGEL 106
           KE+EP    +P N    K +GY  D       +P+L +Y + P  FFK+     +   ++
Sbjct: 203 KENEP---AIPPNHFEGKVYGYLVDDMSAIGIQPILDKYNEDPEKFFKRFDSKPWFRRKV 259

Query: 105 FPYLFNIPHYTP 70
            P LF   H +P
Sbjct: 260 MPLLFGKSHKSP 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,261
Number of Sequences: 27780
Number of extensions: 278769
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)