Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1066
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ...    31   0.63 
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ...    31   0.63 
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    28   4.4  

>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 623

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 209 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 72
           TN+S+   I  F   T++NLT S   RS    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 627

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 209 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 72
           TN+S+   I  F   T++NLT S   RS    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
           putative similar to Swiss-Prot:P05055 polyribonucleotide
           nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
           phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 194 IHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 102
           + S++P   ST++NL   S+   STMKEN S
Sbjct: 877 LKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,207
Number of Sequences: 28952
Number of extensions: 263631
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)