BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVf1064 (608 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 33 0.043 SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.70 SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.7 SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 5.0 SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual 26 5.0 SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 5.0 SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 6.5 SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 25 8.7 >SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 466 Score = 32.7 bits (71), Expect = 0.043 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 393 QFLYSPNYPDEYPNLLNCTYEISAPDKKT 307 Q+++S N+ DE L NC YE+ DKK+ Sbjct: 213 QYVWSDNHRDEMKTLYNCLYELIDRDKKS 241 >SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1628 Score = 28.7 bits (61), Expect = 0.70 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -3 Query: 435 DPICGGNFIATEKEQFLYSPNYPDEYPNLLNCT--YEISAP 319 DP F TE E F Y NY ++ P L N T Y I+ P Sbjct: 502 DPFAD-RFNKTESEVFYYFENYDEDIPILRNLTEFYNIAIP 541 >SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 26.2 bits (55), Expect = 3.7 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +2 Query: 419 PPHIGSQRALNPSRLISESVRKTTFIL*LVNYMTEGHYDHKVLLSPGTHYLSNHK 583 PP I + LN + ES +T ++ L+N +H+ LSP + N++ Sbjct: 72 PPKINHREFLNEEK---ESDTQTRYLKQLINICNSPSKNHETSLSPSKSTIDNNE 123 >SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1297 Score = 25.8 bits (54), Expect = 5.0 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 288 IRQTLFPFFYLALKFHMCSLKDLDIH-LDS*DCTK 389 +R F F + L+F++C D+D+H L + DC++ Sbjct: 776 LRNQPFLFTNILLRFYLCLKDDVDMHFLLNMDCSE 810 >SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 215 Score = 25.8 bits (54), Expect = 5.0 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -3 Query: 408 ATEKEQFLYSPNYPDEYPNLLNCTYEISAPDKKTE 304 A E+E+ + YP+E+ + + T+EI+ P + E Sbjct: 4 AIEEEREILESIYPEEFKCINDSTFEITQPIDREE 38 >SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosaccharomyces pombe|chr 1|||Manual Length = 851 Score = 25.8 bits (54), Expect = 5.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 129 KNSSDFSSRLILSPIIIGGFCFPQ 200 K S + + LILS I++GG C P+ Sbjct: 140 KISENVTPALILSGIMLGGVCVPE 163 >SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual Length = 109 Score = 25.4 bits (53), Expect = 6.5 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +1 Query: 238 IQLSCQRAIRVATFQFK--FDKLYFRFFIWR*NFI 336 +Q+ + AI +A +FK F L+F F W NFI Sbjct: 53 MQVVEREAITLAKTEFKNSFSNLHFFFLFWLLNFI 87 >SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 553 Score = 25.0 bits (52), Expect = 8.7 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +1 Query: 358 IFIWIVRTVQKLFFFCGYKIAATYWIPTRFESIEI 462 IF+ Q + CG A T WIP S EI Sbjct: 443 IFLQTSWQAQAMVAICGLSWACTLWIPYSLFSSEI 477 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,627,167 Number of Sequences: 5004 Number of extensions: 54717 Number of successful extensions: 145 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 268287866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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