Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1064
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    33   0.043
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   0.70 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.0  
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    26   5.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.0  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   6.5  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   8.7  

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 393 QFLYSPNYPDEYPNLLNCTYEISAPDKKT 307
           Q+++S N+ DE   L NC YE+   DKK+
Sbjct: 213 QYVWSDNHRDEMKTLYNCLYELIDRDKKS 241


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 435 DPICGGNFIATEKEQFLYSPNYPDEYPNLLNCT--YEISAP 319
           DP     F  TE E F Y  NY ++ P L N T  Y I+ P
Sbjct: 502 DPFAD-RFNKTESEVFYYFENYDEDIPILRNLTEFYNIAIP 541


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 419 PPHIGSQRALNPSRLISESVRKTTFIL*LVNYMTEGHYDHKVLLSPGTHYLSNHK 583
           PP I  +  LN  +   ES  +T ++  L+N       +H+  LSP    + N++
Sbjct: 72  PPKINHREFLNEEK---ESDTQTRYLKQLINICNSPSKNHETSLSPSKSTIDNNE 123


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 288 IRQTLFPFFYLALKFHMCSLKDLDIH-LDS*DCTK 389
           +R   F F  + L+F++C   D+D+H L + DC++
Sbjct: 776 LRNQPFLFTNILLRFYLCLKDDVDMHFLLNMDCSE 810


>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 408 ATEKEQFLYSPNYPDEYPNLLNCTYEISAPDKKTE 304
           A E+E+ +    YP+E+  + + T+EI+ P  + E
Sbjct: 4   AIEEEREILESIYPEEFKCINDSTFEITQPIDREE 38


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 129 KNSSDFSSRLILSPIIIGGFCFPQ 200
           K S + +  LILS I++GG C P+
Sbjct: 140 KISENVTPALILSGIMLGGVCVPE 163


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 238 IQLSCQRAIRVATFQFK--FDKLYFRFFIWR*NFI 336
           +Q+  + AI +A  +FK  F  L+F F  W  NFI
Sbjct: 53  MQVVEREAITLAKTEFKNSFSNLHFFFLFWLLNFI 87


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 358 IFIWIVRTVQKLFFFCGYKIAATYWIPTRFESIEI 462
           IF+      Q +   CG   A T WIP    S EI
Sbjct: 443 IFLQTSWQAQAMVAICGLSWACTLWIPYSLFSSEI 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,167
Number of Sequences: 5004
Number of extensions: 54717
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)