Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1064
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0812 - 21694348-21694632,21695392-21695574,21696366-21697526     28   6.7  
06_03_1332 - 29403320-29407804                                         28   6.7  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    27   8.8  
01_03_0233 + 14042548-14044950                                         27   8.8  

>07_03_0812 - 21694348-21694632,21695392-21695574,21696366-21697526
          Length = 542

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 57  IIVVEFIWPPQSKVLKAILKPFCVKNSSDFSSRLI 161
           IIV+++  PP S++++ +L     K S+D   RL+
Sbjct: 102 IIVLQYDEPPDSRIVQEVLAAHARKGSTDTHIRLL 136


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -3

Query: 468  DINLDGFKARWDPICGGNFIATEKEQFLYSPNYPDEYPNLLNCTYEISAPDKKTEIKFVE 289
            D +LDG  A W  +  GN    ++      P  P EY  +L+C   ++  D    +  +E
Sbjct: 1066 DEHLDG--AFWRRLVFGNLTDLKELDLKKCPPLPLEYLLMLSCLRRLTISDSSNVMSHLE 1123

Query: 288  FELEGSY 268
             E   SY
Sbjct: 1124 SENTVSY 1130


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 462 NLDGFKARWDPICGGNFIATEKEQFLYSPNYPDEYPNL 349
           +LDGF A  D I GG F+  + E  L +    +E+P L
Sbjct: 161 DLDGFVAAMDEISGGRFLCGDGEVDLVA-MVGEEFPEL 197


>01_03_0233 + 14042548-14044950
          Length = 800

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 115 NLFVLKTHRISVLD*FCRRSSSEVSVFHSILLRNSRKFQHKIQLSCQRAIRVATFQFKFD 294
           N  +L T   ++L    RR    V +   +L R+  K+   +   C+R +  A    KFD
Sbjct: 386 NHLLLITDYAALLSATMRRYGYPVGMLLDVLARHRDKYHDLLLADCRRQVVEALAADKFD 445

Query: 295 KLYFR 309
           ++  R
Sbjct: 446 QMLMR 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,539
Number of Sequences: 37544
Number of extensions: 301741
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)