Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1064
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 396 LFLWL*NCRHILDP 437
           LFLWL  C  +L+P
Sbjct: 411 LFLWLGYCNSLLNP 424


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 79  HINSTTMIKSTRTEKYHENMN 17
           H N  T I STR  K H   N
Sbjct: 296 HNNCLTRIPSTRINKQHTRGN 316


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 608 NCTKDAVIIYDWKDNEY 558
           N T    +IY+WK  +Y
Sbjct: 24  NLTNSLKVIYEWKYIDY 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,856
Number of Sequences: 438
Number of extensions: 3624
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)