Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1064
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex pr...    28   5.6  
At5g57030.1 68418.m07118 lycopene epsilon cyclase identical to l...    27   7.4  
At3g26350.1 68416.m03287 expressed protein  ; expression support...    27   7.4  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    27   9.7  
At3g51830.1 68416.m05684 phosphoinositide phosphatase family pro...    27   9.7  
At1g04650.1 68414.m00462 hypothetical protein                          27   9.7  

>At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex
           protein, putative similar to iron-sulfur cluster
           assembly complex ISCU1 (GI:11545705) [Homo sapiens];
           nifU protein homolog YPL135w (GI:15619823)
           [Saccharomyces cerevisiae] PIR2:S69049
          Length = 167

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 169 GDKINLELKSDEFLTQKGFKIAFKTFDCGGHINSTTM 59
           GD + L++K DE  T +     FKTF CG  I S+++
Sbjct: 64  GDVMKLQIKVDE-KTGQIVDARFKTFGCGSAIASSSV 99


>At5g57030.1 68418.m07118 lycopene epsilon cyclase identical to
           lycopene epsilon cyclase [GI:1399181]
          Length = 524

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 596 DAVIIYDWKDNEYQEIAKLCGRNVPLSYN*PTTK*RLFFEQ 474
           D ++  D++D   +++  L        Y  P TK RLFFE+
Sbjct: 281 DQMVFMDYRDYTNEKVRSLEAEYPTFLYAMPMTKSRLFFEE 321


>At3g26350.1 68416.m03287 expressed protein  ; expression supported
           by MPSS
          Length = 356

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -1

Query: 506 PTTK*RLFFEQIQILISMDSKRVGIQYVAAIL*PQKKNSFCTVLTIQMNIQIF*TAHMKF 327
           P+ K  + F  +   +   +  +  QY+     P+K + F  V  +   +Q+  T   + 
Sbjct: 239 PSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANVHLVSSQVQLQATQSREL 298

Query: 326 QRQIK 312
           QRQI+
Sbjct: 299 QRQIE 303


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 342 SLKDLDIHLDS*DCTKTVLFLWL*NCRHILDPNAL 446
           +L  L I LD  D  K V+FL   N R +LDP  L
Sbjct: 560 TLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALL 594


>At3g51830.1 68416.m05684 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain ; Contains nonconsensus AT/AA
           splice site at intron 7
          Length = 588

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 244 LSCQRAIRVATFQFKFDKLYFR 309
           L C  A+R AT Q K D+ YFR
Sbjct: 105 LPCNEALRFATAQEKKDETYFR 126


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 14  TIHIFVIFFSSGRFDHSSGVYMAATIEGFEGDF 112
           T+ ++    +  R DH+  VY+A  ++GF  +F
Sbjct: 572 TVQVYKHISTESRSDHAPDVYLALLLDGFPLNF 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,898
Number of Sequences: 28952
Number of extensions: 270474
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)