Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1059
         (309 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    26   0.10 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.10 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.32 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   0.97 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   3.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   3.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   5.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    20   6.8  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 0.10
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 262 SQAPDSKERPSRRDPPSLRAWHPLRE 185
           SQAP S++     DP ++  W P RE
Sbjct: 99  SQAPASQQSLDASDPDAMGKWCPRRE 124


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.10
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 262 SQAPDSKERPSRRDPPSLRAWHPLRE 185
           SQAP S++     DP ++  W P RE
Sbjct: 255 SQAPASQQSLDASDPDAMGKWCPRRE 280


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.32
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTG 153
           +P P+   G  P     PRS+R +TG
Sbjct: 262 APSPTAGAGGLPPQVPSPRSQRRYTG 287



 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 258 KHPTLRSVPLA 226
           +HP+LR  PLA
Sbjct: 28  EHPSLRGTPLA 38


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 0.97
 Identities = 20/76 (26%), Positives = 25/76 (32%)
 Frame = -1

Query: 252 PTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVLG 73
           PT    P    L  YG G  Y   A  K     S    KA   EH  + Y  K    +L 
Sbjct: 62  PTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLA 121

Query: 72  YIPVRSPXLRKSWLVS 25
            I   +     +W  +
Sbjct: 122 IITKMTLTQVSTWFAN 137



 Score = 19.8 bits (39), Expect = 6.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 42  SLVXASEQEYSPALNPVVLIDNG 110
           S+   S   YSP  NP  L D G
Sbjct: 24  SIGVESSAFYSPLSNPYALKDAG 46


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 197 PSTGKRPRSRR 165
           PS+G+ PR+RR
Sbjct: 203 PSSGRSPRTRR 213


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 161 WTGVVATRKRNLP 123
           WTG V  RK+  P
Sbjct: 237 WTGQVTVRKKRKP 249


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 109 PLSIKTTGFSAGLYS 65
           P+S++ TGFS   YS
Sbjct: 20  PVSVEPTGFSPKGYS 34


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 265 HSQAPDSKERPSRRDPPSL 209
           H  +P+SK+  +   PP L
Sbjct: 217 HPDSPNSKKSATPSPPPQL 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,378
Number of Sequences: 336
Number of extensions: 1126
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)