Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1059
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   1.9  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   1.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   4.5  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    24   4.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   5.9  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    24   5.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   5.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    24   5.9  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 283 TTRLGLHSQAPDSKERPSRRDPPSLRAWHPLRENGP 176
           T R  + +    S+     R+P S RA  P R+N P
Sbjct: 150 TQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAP 185


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 212 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 105
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 137 KRNLPNTTSPVID*NNGIQCW 75
           +RN P+  +P+ D  N  Q W
Sbjct: 638 RRNAPDINNPIADFQNSFQNW 658


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 292 MEFTTRLGLHSQAPDSKERPSRRDPPSLRAWHPLRE 185
           + +T  L LH +A +  +R    D  SL+ W   R+
Sbjct: 248 LPYTPPLSLHDKAREFFKRMEDGDEESLKVWARFRD 283


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 246 LRSVPLAATLRRYGPGTLYGK 184
           L  VP      RYG G LYGK
Sbjct: 705 LEHVPKFEPFIRYGAGQLYGK 725


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 181 GPVQDELGQXXXXXXXXXXXTPHLPLSIKTTGFSAGLYSCSLA 53
           G +++ L Q            PH+PLS +   F+   ++C++A
Sbjct: 2   GELKEILKQRYHELLDWNVKAPHVPLSQRLKHFTWSWFACTMA 44


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 266 ALSSTRL*GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSP 108
           +++ST +   S+ P PS +     +T     S  T T V  T   N   TT+P
Sbjct: 60  SVTSTNI--TSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP 110


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 230  SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNT 117
            +P PS A      +G  P +   + G+  T   N P+T
Sbjct: 1016 TPAPSSAFAFGNQSGTNPAAPAGFGGITNTATNNPPST 1053


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,168,096
Number of Sequences: 5004
Number of extensions: 21121
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)