Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1059
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448... 29 0.56
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406... 29 0.74
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 29 0.98
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998 28 1.7
03_03_0249 + 15832086-15833261 28 1.7
04_03_0200 - 12570414-12570712,12572704-12573007 27 2.3
03_05_0862 + 28353235-28354431 27 2.3
11_06_0164 + 20833525-20834685,20835053-20835124,20836302-208363... 27 3.0
02_05_0189 + 26590489-26591529 27 4.0
11_02_0130 + 8633477-8633605,8633618-8633698 26 5.2
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 26 5.2
04_01_0164 + 1858758-1858953,1859178-1859485 26 5.2
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 26 6.9
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 25 9.2
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 25 9.2
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 25 9.2
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 25 9.2
04_03_0872 + 20452534-20453271 25 9.2
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 25 9.2
>04_04_0720 -
27543998-27544230,27544339-27544432,27544571-27544898,
27545387-27545850
Length = 372
Score = 29.5 bits (63), Expect = 0.56
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 290 GVYHPLRAALSSTRL*GASLSPRPSVATGLAPSTGKRPRSRR 165
G H +R A SS+ GA+LSP S+++G P+T R+ R
Sbjct: 35 GGKHLVRLAGSSSLRGGAALSPAVSISSGSRPATRAGARALR 76
>01_06_0362 +
28739969-28740232,28740336-28740452,28740560-28740660,
28741251-28741322,28741433-28741514,28741607-28741687,
28742548-28742589,28743009-28743047,28743278-28743343,
28743444-28743590,28743638-28743652
Length = 341
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 42 SLVXASEQEYSPALNPVVLIDNGRCGVREVPL 137
S V +E+ Y+P+++PV+L D R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 28.7 bits (61), Expect = 0.98
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 281 HPLRAALSSTRL*GASLSPRPSVATGLAPSTGKRP 177
HP+ A SS+ + SL P PSVAT +A P
Sbjct: 31 HPIFGAASSSPIAHRSLLPTPSVATAVAVQVDPPP 65
>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
Length = 473
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 236 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 144
+L RPSV G A +T + P SRR GV A
Sbjct: 97 TLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127
>03_03_0249 + 15832086-15833261
Length = 391
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 278 PLRAALSSTRL*GASLSPRPSVAT-GLAPSTGKRPRSRRTWTGVVATRKR 132
PLR LS+ A SP PS A L +TGK PR WT A R
Sbjct: 207 PLRRQLSAPMPPPAP-SPAPSTARRSLDSATGKAPRWIEFWTDAAAAGDR 255
>04_03_0200 - 12570414-12570712,12572704-12573007
Length = 200
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 242 GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 129
G + RPS G+A S+G + RS + W T K N
Sbjct: 109 GVEQAARPSCNAGIASSSGGKKRS-KAWEDFDITEKEN 145
>03_05_0862 + 28353235-28354431
Length = 398
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 136 FLVATTPVQVRLERGRFPVEGARPVATEGRGE 231
FLV + P RG VE RPVA G GE
Sbjct: 262 FLVESPPGSAGGRRGLMQVELLRPVAASGGGE 293
>11_06_0164 +
20833525-20834685,20835053-20835124,20836302-20836328,
20836419-20836496,20837005-20837046
Length = 459
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 154 PVQVRLERGRFPVEGARPVATEGRGERDA 240
P +V + + R P EGA VA G G+ A
Sbjct: 19 PARVAMHKRRLPAEGALSVARVGAGDEAA 47
>02_05_0189 + 26590489-26591529
Length = 346
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 281 HPLRAALSSTRL*GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVI 102
HP L T + SP PS T LA G+R R + V + ++ T+P +
Sbjct: 7 HPSSNLLLPTTTALPNPSPNPSRVTPLASGRGRRGHHRVCASSVAPAQPASVAQPTAPAL 66
>11_02_0130 + 8633477-8633605,8633618-8633698
Length = 69
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 144 DEKAEPPEHHISRYRLKQRDSVLGYIPVRSPXL 46
DEK +PPE + + + R LG+ P R L
Sbjct: 30 DEKRDPPEDDDNMHEMNMRRGNLGWGPERGADL 62
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 192 YGKTAPFKTNLDRSRRDEKAEPPE 121
YG + P K NL+ S D AE P+
Sbjct: 613 YGNSTPEKGNLEDSETDSLAESPQ 636
>04_01_0164 + 1858758-1858953,1859178-1859485
Length = 167
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 242 GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKR 132
G S R S ATG + + WTGV +TR R
Sbjct: 101 GGSSPSRRSAATGSILRSHLHKAAMTKWTGVTSTRPR 137
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 227 PRPSVATGLAPSTGKRPRSR 168
PRP VA L P + K PR+R
Sbjct: 80 PRPPVAVPLKPESPKPPRAR 99
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -2
Query: 236 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 129
SL P V PSTG P SR VV KRN
Sbjct: 711 SLIGDPKVVFMDEPSTGLDPASRNNLWNVVKEAKRN 746
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 130 FRFLVATTPVQVRLERGRFPVEGARPVATEGRGERDA 240
+ VA PVQ R+E G F +G + A E GE A
Sbjct: 167 YNLAVAKAPVQTRIETGFFTKKGKQ--AREAIGESRA 201
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 172 ERGRFPVEGARPVATEGRGERDA 240
+RGR P PV +EGR + DA
Sbjct: 60 KRGRSPPPPPSPVISEGRDDEDA 82
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 256 APDSKERPSRRDPPSLRAWHPLRE 185
AP+S + P R P +L W +R+
Sbjct: 550 APESLDHPEDRQPLALEVWQSVRK 573
>04_03_0872 + 20452534-20453271
Length = 245
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 243 RSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDE 139
R++P+ + GP Y ++AP K + RR E
Sbjct: 140 RAIPMTPRPKSAGPAAPYHQSAPVKVPVRPPRRQE 174
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 246 LRSVPLAATLRRYGPGTLYGKTAP 175
L S AA LRRYGP L AP
Sbjct: 49 LSSEEAAARLRRYGPNELERHAAP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,446,029
Number of Sequences: 37544
Number of extensions: 163139
Number of successful extensions: 595
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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