Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1059
(309 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9) 33 0.063
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.063
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8) 33 0.063
SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.063
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9) 33 0.063
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 33 0.063
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.063
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.063
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 32 0.083
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 32 0.083
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19) 28 1.3
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 27 2.4
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7) 27 3.1
SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_5107| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 27 4.1
SB_18947| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 26 7.2
SB_31883| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2) 26 7.2
SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_7131| Best HMM Match : Tetraspannin (HMM E-Value=0.17) 25 9.5
SB_56526| Best HMM Match : EPTP (HMM E-Value=3.2) 25 9.5
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0) 25 9.5
SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 148
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 61 GCLGMQPKMGGKLHLKLNI 79
>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 7 GCLGMQPKMGGKLHLKLNI 25
>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
Length = 148
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 61 GCLGMQPKMGGKLHLKLNI 79
>SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 35 GCLGMQPKMGGKLHLKLNI 53
>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 147
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 60 GCLGMQPKMGGKLHLKLNI 78
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 119 GCLGMQPKMGGKLHLKLNI 137
>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 18 GCLGMQPKMGGKLHLKLNI 36
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 251 GCLRVQP*AGGKLHLRLNM 307
GCL +QP GGKLHL+LN+
Sbjct: 724 GCLGMQPKMGGKLHLKLNI 742
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 32.3 bits (70), Expect = 0.083
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 306 IFSLRWSLPPA*GCTLKHP 250
IFS RWSLPP GC K P
Sbjct: 106 IFSFRWSLPPILGCIPKQP 124
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 32.3 bits (70), Expect = 0.083
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 306 IFSLRWSLPPA*GCTLKHP 250
IFS RWSLPP GC K P
Sbjct: 75 IFSFRWSLPPILGCIPKQP 93
>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
Length = 1828
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 171 KTNLDRSRRDEKAEPPEHHISRYRLKQRDSV-LGYIPVRSPXLRKSWLVSFPP 16
KT S + P +RYR++ RDSV ++ R+P S L++F P
Sbjct: 364 KTANATSSATNTTDLPRRRGTRYRIRARDSVDKSFVKFRNPNPSFSGLLTFEP 416
>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 1139
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 227 PRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 105
P P T + + + T +G++++RKR P TT+P+
Sbjct: 178 PAPITTTPITTTITNHRLNCHTNSGILSSRKRPAPITTTPI 218
>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
Length = 1130
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 277 RLGLH--SQAPDSKERPSRRDPPSLRAWHPLRENG 179
RLG+H S A + PSRR PPS+ H +R+ G
Sbjct: 713 RLGVHKHSVATHVEADPSRRRPPSVHRCH-IRKGG 746
>SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 309 VIFSLRWSLPPA*GCTLKHP 250
++ + RWSLPP GC K P
Sbjct: 30 LLHTRRWSLPPILGCIPKQP 49
>SB_5107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = -3
Query: 292 MEFTTRLGLHSQAPDSKERPS-----RRDPPSLRAWHPLREN 182
MEFTT GLHSQ + P R PP + P E+
Sbjct: 1 MEFTTHFGLHSQTTSNSCSPGDPLVLERPPPRWSSNSPYSES 42
>SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -1
Query: 258 KHPTLRSVPLAA-TLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEH 118
K P R + L T+ R+GPGT+ N+ R PP H
Sbjct: 262 KRPRHRHISLCQETITRHGPGTITTPPRHVPDNITRHGPGTITTPPRH 309
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 294 RWSLPPA*GCTLKHP 250
RWSLPP GC K P
Sbjct: 62 RWSLPPILGCIPKQP 76
>SB_18947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -2
Query: 278 PLRAALSSTRL*GASLSPRPSVA---TGLAPSTGKRPRSRRTWT 156
P L STRL GA+ PRPS + +G + G R WT
Sbjct: 11 PCAGTLPSTRLSGATRRPRPSRSYRVSGYERTYGLYGTDRTLWT 54
>SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 292 MEFTTRLGLH--SQAPDSKERPSRRDPPSLRAWH 197
+ F RLG+H S + PSRR PPS+ H
Sbjct: 237 VRFGLRLGVHKHSVVTHVEADPSRRRPPSVHRCH 270
>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = -1
Query: 222 TLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVLGYIPVRSPXLR 43
T+ Y T T P + +S ++ PP R RL + + + ++PV+ P +
Sbjct: 81 TIEPYNLTTTRRITIPLLPKV-KSSKNLNEMPPRIQCMRIRLPRFEYTISHVPVQKPEIT 139
Query: 42 KSWLVS 25
++ ++
Sbjct: 140 TAYTIT 145
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 260 SSTRL*GASLSPRPSVATGLA--PSTGKRPRSRRTWTGVVATRKRNLPNTTS 111
S+ L +S +P AT L PST S T T + AT +LP+T+S
Sbjct: 174 STPSLEASSNTPTALSATSLMSLPSTSSLEASSNTPTALSATSLMSLPSTSS 225
>SB_31883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 181 RFPVEGARPVATEGRGERDAP 243
R PV G R + T+G G+ AP
Sbjct: 27 RLPVRGVRHLGTDGHGDYRAP 47
>SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)
Length = 372
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 155 GVVATRKRNLPNTTSPVID*NNGIQCWAIFLFARRY*GNPG 33
G + K NLP+T VI + GI W++ RR N G
Sbjct: 98 GDIIIDKHNLPDTGENVIARHWGIDQWSMGYLCRRGQSNGG 138
>SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 241 ERPSRRDPPSLRAWHPLRENG 179
+R + PP LR+W P E G
Sbjct: 114 QRKGKEQPPILRSWTPHTEEG 134
>SB_7131| Best HMM Match : Tetraspannin (HMM E-Value=0.17)
Length = 173
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 224 RPSVATGLAPSTGKRPRSRRTWTGVV 147
RP +A GL S G+ R+R+T T V
Sbjct: 148 RPGLADGLDDSDGEEDRTRKTRTVAV 173
>SB_56526| Best HMM Match : EPTP (HMM E-Value=3.2)
Length = 50
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 161 WTGVVATRKRNLPNTTSPVID 99
W G VA R + LP+ PV+D
Sbjct: 4 WDGNVAKRTQKLPDQGEPVLD 24
>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1737
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 258 KHPTLRSVPLAATLRRYGPGTL 193
+HP + +PL T R YG T+
Sbjct: 1389 RHPAITDIPLLRTTRYYGHPTI 1410
>SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 268 LHSQAPDSKERPSRRDPPSLRAWHPLRENG 179
L Q P S + P + P SL+ W P + G
Sbjct: 71 LRPQVPLSPQLPGQHTPRSLQKWSPAIDAG 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,094,536
Number of Sequences: 59808
Number of extensions: 169333
Number of successful extensions: 560
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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