Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1059
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 26 4.7
Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical pr... 26 4.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 4.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 4.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 4.7
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 26 4.7
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 25 8.1
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 25 8.1
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 25 8.1
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
protein C32E12.4 protein.
Length = 1553
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 252 PTLR--SVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYR 100
PT R SV ++T RY P T+ + +L R R + + ++ ++YR
Sbjct: 96 PTSRADSVSSSSTFSRYRPDNSVSSTSTYTPSLSRYRSTDLSSTSDYSSTKYR 148
>Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical
protein T02B5.3 protein.
Length = 656
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -2
Query: 185 KRPRSRRTWTGVVATRK 135
++PR ++TW+GV+ T+K
Sbjct: 64 RKPRPQKTWSGVLETKK 80
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 239 ASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTT 114
A +P+P+ + AP + K P +RR+ AT + N+T
Sbjct: 55 AKPAPKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTINST 96
>Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical
protein D1081.2 protein.
Length = 327
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 242 GASLSPRPSVATGLAPSTGKRPRSR 168
G S +P PS +TGL P+ GK+ + R
Sbjct: 24 GTSSTPTPSSSTGLLPN-GKKTKGR 47
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 246 LRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 136
L SVP ++L P TL A K++L + DEK
Sbjct: 2589 LHSVPSLSSLVEVNPNTLMQTLASEKSSLKAAEEDEK 2625
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 246 LRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 136
L SVP ++L P TL A K++L + DEK
Sbjct: 2589 LHSVPSLSSLVEVNPNTLMQTLASEKSSLKAAEEDEK 2625
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 246 LRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 136
L SVP ++L P TL A K++L + DEK
Sbjct: 2589 LHSVPSLSSLVEVNPNTLMQTLASEKSSLKAAEEDEK 2625
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 239 ASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTT 114
A +P+P+ + AP + K P +RR+ AT + N+T
Sbjct: 55 AKPAPKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTINST 96
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 269 AALSSTRL*GASL-SPRPSVATGLAPSTGKRPRS 171
A+ ++TR+ S S RP +TG APS RP S
Sbjct: 44 ASTTNTRMERPSTASSRPRTSTGRAPSARARPPS 77
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -1
Query: 249 TLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVL 76
+LR ++ LRRY +T D R K P HH++R + Q S L
Sbjct: 394 SLRGQSISRYLRRYN--------IELRTPDDYKRDSSKPSKPSHHVARRNVVQNSSFL 443
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 25.4 bits (53), Expect = 8.1
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = -2
Query: 308 SYLALDGVYHPLRAALSSTRL*GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 129
S L+L G P ++S+ + SP SVA+ PST R RKR+
Sbjct: 110 SALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESR------QCRKRS 163
Query: 128 LPNTTSP 108
L ++T+P
Sbjct: 164 LSSSTTP 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,527,059
Number of Sequences: 27780
Number of extensions: 120251
Number of successful extensions: 361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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