Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1059
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.36 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   1.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   1.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   3.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   7.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 115 HLPLSIKTTGFSAGLYSCSLAXTKE 41
           H PLS+K  G   GL    LA T +
Sbjct: 319 HTPLSVKFPGMGHGLQPPDLAGTSQ 343


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 109 PLSIKTTGFSAGLYSCSLAXTKE 41
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 109 PLSIKTTGFSAGLYSCSLAXTKE 41
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 293 DGVYHPLRAALSSTRL*GASLSPRPSVATGLAPST 189
           + VY+P+   +S  +   A  +  PS+A    PS+
Sbjct: 323 NAVYNPIVYGISHPKYRAALFAKFPSLACAAEPSS 357


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 129 PPEHHISRYRLKQRD 85
           PP+  IS YR  +RD
Sbjct: 127 PPQEVISHYRRTRRD 141


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 147 RDEKAEPPEHHISRYRLKQRD 85
           +D +   PE+  S YRL + D
Sbjct: 93  KDNRLRLPENMTSEYRLLEVD 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,376
Number of Sequences: 438
Number of extensions: 1520
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)