Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1059
(309 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 28 1.1
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re... 28 1.5
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica... 27 2.6
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 27 2.6
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 27 2.6
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 27 3.4
At3g59620.1 68416.m06652 hypothetical protein 27 3.4
At3g47750.1 68416.m05202 ABC transporter family protein probable... 27 3.4
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami... 26 4.5
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 26 5.9
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 26 5.9
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P... 26 5.9
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 26 5.9
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 26 5.9
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 26 5.9
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 26 5.9
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 26 5.9
At1g26330.1 68414.m03211 hypothetical protein 26 5.9
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 26 5.9
At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside h... 25 7.8
At4g21850.2 68417.m03160 methionine sulfoxide reductase domain-c... 25 7.8
At4g21850.1 68417.m03159 methionine sulfoxide reductase domain-c... 25 7.8
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 25 7.8
At3g59180.1 68416.m06598 hypothetical protein contains a novel d... 25 7.8
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP TGK+P R + G TRK + S +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419
>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
reduced phytochrome signaling (REP1) / basic
helix-loop-helix FBI1 protein (FBI1) / reduced
sensitivity to far-red light (RSF1) / bHLH protein 26
(BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
in far-red 1 (bHLH-like protein HFR1) (Reduced
phytochrome signaling) (Basic helix-loop-helix FBI1
protein) (Reduced sensitivity to far-red light)
[Arabidopsis thaliana]
Length = 292
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 309 VIFSLRWSLPPA*GCTLKHPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRS 151
+I +L W LPP + H + +S+ L + P +L+G F + LD S
Sbjct: 233 LIPALNWPLPPFTNISFPHSSSQSLFLTTSSPASSPQSLHGLVPYFPSFLDFS 285
>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
to auxin response factor 8 GI:4104931 from [Arabidopsis
thaliana]
Length = 811
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 109 PLSIKTTGFSAGLYSCSLAXTKEIL 35
P+S+ +GF LYSC T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692
>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
bHLH127 transcription factor
Length = 880
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 284 YHPLRAALSSTRL*GASLSPRPSVATGLAPSTGKRPRS 171
+HPLR + L ++ +P P + LAP K P S
Sbjct: 747 HHPLRQDYLCSELYASTPAPHPQSSVSLAPPPPKPPSS 784
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P ++ AP T K+P R + G TRK + S +D
Sbjct: 512 SREPPISMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 555
>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886
Length = 1285
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S +P + AP T K+P R + G TRK + S +D
Sbjct: 608 SRKPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 651
>At3g59620.1 68416.m06652 hypothetical protein
Length = 120
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 148 TTPVQVRLERGRFPVEGAR 204
T P Q E GR PVEGAR
Sbjct: 62 TEPFQFDREHGRVPVEGAR 80
>At3g47750.1 68416.m05202 ABC transporter family protein probable
transport protein ABC-C, Homo sapiens, PIR2:S71363
Length = 944
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 236 SLSPRPSVATGLAPSTGKRPRSRRT-WTGVVATRK 135
SL P V PSTG P SRR+ WT + +K
Sbjct: 774 SLIGSPKVVYMDEPSTGLDPASRRSLWTAIKGAKK 808
>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 457
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 211 LRAWHPLRENGPVQDELGQ 155
L AW P+ GP++DE G+
Sbjct: 285 LDAWAPMGPKGPIRDEAGK 303
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 512 SREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 555
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 512 SREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 555
>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1314
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 510 SREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 553
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 512 SREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 555
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 512 SREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 555
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 23 KETNQDFLSXGERTGI*PSTESRCFNR*REMWCSGGSAFSSRRLLSK 163
KE + ++ + GI P E+ +NR +++C GSA SS ++++
Sbjct: 168 KEAKRVYIEMPKMYGIEPDLET--YNRMIKVFCESGSASSSYSIVAE 212
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 492 SREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 535
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains
Pfam profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 510 SREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 553
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 220 PPSLRAWHPLRENGPVQDEL 161
P SL AWHP+ + ++D +
Sbjct: 1034 PTSLFAWHPVHSHSTIEDNV 1053
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 296 LDGVYHPLRAALSSTRL*GASLSPRPSVATGLAPSTGKRPRSRRTWT--GVV 147
L+ V P+R A S + PR G P+ ++PR R WT GVV
Sbjct: 599 LNSVARPVRNAGQS-----GNTPPRVPAVFGTTPAAPQQPRDRAPWTSQGVV 645
>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside
hydrolase family protein contains Pfam profile PF01156:
Inosine-uridine preferring nucleoside hydrolase
Length = 890
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -3
Query: 286 FTTRLGLHSQAPDSKERPSRRDPPSLRAWHPLRENG 179
+T + AP +RP R P ++ W L ++G
Sbjct: 625 YTAENSVTHGAPRDTDRPELRQPLAIEVWQNLTKSG 660
>At4g21850.2 68417.m03160 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 121
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 221 PSVATGLAPSTGKRPRSRRTWTGVVA 144
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At4g21850.1 68417.m03159 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 143
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 221 PSVATGLAPSTGKRPRSRRTWTGVVA 144
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 230 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 99
S P + AP T K+P R + G TRK + S +D
Sbjct: 458 SREPPTSMDKAPVTAKKPSRRMSTKGSTETRKSSRLTRVSHDVD 501
>At3g59180.1 68416.m06598 hypothetical protein contains a novel
domain with similarity to F-box domain;
Length = 475
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 309 VIFSLRWSLPPA*GCTLKHPTLRSVPLAATLRRYGP 202
V+ +L W L C++ +PTL+ V + + + Y P
Sbjct: 162 VMINLMWGLMDV--CSVSNPTLKRVTICSEIIDYNP 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,357,517
Number of Sequences: 28952
Number of extensions: 117536
Number of successful extensions: 331
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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