Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1056
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   5.1  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.8  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   6.8  

>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 617 YCTKYINKQWLWIKHTIN 564
           +C+K++N  WLW+   +N
Sbjct: 411 FCSKHLNILWLWLFRMLN 428


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 217 NSNFFVCYFLVVSLFTCSFGTLEIKQNY 300
           NS+ F C F   S + C  GT  I + Y
Sbjct: 531 NSHRFPCIFTSFSCYNCISGTRNISRQY 558


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 605 ILYNNVGNIPPPPRGRVSLQSRRIVPQCAGHI 700
           +L  N   +  PP  +VS+    I  QCAG I
Sbjct: 522 VLEPNTCLVVTPPEAKVSVSFEEISDQCAGSI 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,276
Number of Sequences: 5004
Number of extensions: 74222
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)