Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1056
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0141 + 8744928-8746187                                           31   1.3  
02_01_0279 - 1860410-1860508,1861536-1861889,1862660-1862805,186...    30   1.8  
05_01_0354 + 2770515-2770655,2770767-2771380,2772152-2772341,277...    30   2.3  
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781...    29   4.1  
01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810...    28   9.4  

>11_02_0141 + 8744928-8746187
          Length = 419

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 700 DMAGTLRHNTPRLQRHAAAWGRWYVANVIVQNTLINSGSG 581
           +++G  R  TP+  R  +AW  WY A + ++      G G
Sbjct: 143 NVSGDFRFATPQGLREFSAWAGWYRAGLAIKRRCARGGDG 182


>02_01_0279 -
           1860410-1860508,1861536-1861889,1862660-1862805,
           1862885-1862925,1863010-1863173,1863217-1863281,
           1863410-1863670,1863754-1863817,1863946-1864006,
           1864112-1864473
          Length = 538

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
 Frame = -1

Query: 281 SVPKLHVNNETTRK*QTKKFEFPHEQLLGCHKNIIC-------KQKTVLQK*HCEKVIYE 123
           S+ +LH  N+  R+   K  E      LGCH+NI+         ++  +Q   C++ +  
Sbjct: 316 SIRQLH--NDRERRQAVK--EVQALAALGCHENIVGYFTSWFENKQLFIQMELCDRCLSM 371

Query: 122 STNQYLYCGDCVELL 78
             NQ L CG+ +ELL
Sbjct: 372 DRNQPLKCGEALELL 386


>05_01_0354 +
           2770515-2770655,2770767-2771380,2772152-2772341,
           2772570-2772634,2772719-2773214
          Length = 501

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 702 QIWPAHCGTIRRDCSDTRPRGGGGMLPTLL 613
           ++ PA+ G IRRD +  R RGGGG+   LL
Sbjct: 116 RLCPAYFGAIRRDLAPWR-RGGGGVTRALL 144


>06_03_0819 -
           24977204-24977290,24977372-24977746,24977823-24978199,
           24978456-24978770,24978861-24979296,24979386-24979463
          Length = 555

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 632 PPPPRGRVSLQSRRIVPQCAGHIC 703
           PPPP G V L+  R V    G +C
Sbjct: 296 PPPPHGEVELRKLRKVKHVGGKVC 319


>01_05_0246 +
           19880364-19880565,19880721-19880801,19880891-19881054,
           19881784-19881835,19882110-19882462
          Length = 283

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 480 TTIVSGLQCCLQGKL 436
           TTI S +QCC++GKL
Sbjct: 71  TTITSPIQCCIKGKL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,912,751
Number of Sequences: 37544
Number of extensions: 453617
Number of successful extensions: 946
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)