Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1056
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.33 
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_40324| Best HMM Match : PAN (HMM E-Value=0.39)                      28   9.5  
SB_50732| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_34247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 243 SCRLIIHMQLWNAGNQTKLSVARRLHQYLA*ICLGRQNRPFFQLYQHFIKILQQFSN 413
           +C  +  ++LW+A N+ ++S  R + +Y   +C+G+       L + FI   Q F+N
Sbjct: 277 TCLNVTTIRLWSAANKREISTRRVVARYRQVVCMGQFEDAESYLLKSFICYEQIFTN 333


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 567 YCVFYPEPLFINVFCTITLATYHRPHAAACRCSRGVLCRNVPAISVKSQYLPL 725
           Y +F P  +F N F       Y  PHA   R S   LC     + ++    P+
Sbjct: 593 YKLFIPASVFYNGFLLFAYPLYEAPHACLIRASYTRLCIRTARLFLRPSMTPV 645


>SB_40324| Best HMM Match : PAN (HMM E-Value=0.39)
          Length = 139

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 331 ARYWCSLLATDSF 293
           +RYWC LLATD +
Sbjct: 86  SRYWCELLATDKY 98


>SB_50732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 331 ARYWCSLLATDSF 293
           +RYWC LLATD +
Sbjct: 6   SRYWCELLATDKY 18


>SB_34247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 331 ARYWCSLLATDSF 293
           +RYWC LLATD +
Sbjct: 86  SRYWCELLATDKY 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,552,495
Number of Sequences: 59808
Number of extensions: 542138
Number of successful extensions: 1307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)