Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1056
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm rece...    30   1.6  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81536-2|CAB63199.1|  330|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z81508-7|CAB04149.1|  330|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 160 protein.
          Length = 336

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +1

Query: 109 YWFVDS*ITFSQCYFCRTVFCLQMIFL*HPKSCSCGNSNFFVCYFLVVSLFTCSFGTLEI 288
           Y  + S    S C F     C+ ++ +        G+  + +CYF ++S F  +F  L I
Sbjct: 4   YSLIKSIFQTSSCLFSLLTNCVIIVLIFSSSPSKMGSYKYLLCYFSMLSSFV-AFLDLLI 62

Query: 289 KQNYPSLGGC 318
                S G C
Sbjct: 63  SPYVYSFGSC 72


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 463 TTMLPAGEARK*INIISFENCCSIFMKC*YN 371
           T  LP+GE     ++I+F+NC ++ M+  YN
Sbjct: 782 TRTLPSGEIILSESLIAFQNCTTVLMQLIYN 812


>Z81536-2|CAB63199.1|  330|Caenorhabditis elegans Hypothetical
           protein F40D4.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 495 KLVNNSPQRRYGRPYKNFYIT-NIIYCVFYPEPLF 596
           +LVN     +  + Y+  ++T N +Y   YP PL+
Sbjct: 122 RLVNGQKSGKMRKLYRLLFVTANYVYATLYPTPLY 156


>Z81508-7|CAB04149.1|  330|Caenorhabditis elegans Hypothetical
           protein F20E11.12 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 495 KLVNNSPQRRYGRPYKNFYIT-NIIYCVFYPEPLF 596
           +LVN     +  + Y+  ++T N +Y   YP P++
Sbjct: 122 RLVNGQKSNKMRKLYRLLFVTANYVYATLYPAPIY 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,708,008
Number of Sequences: 27780
Number of extensions: 430586
Number of successful extensions: 1087
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)