Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1049
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0144 + 1089090-1091390                                           31   0.65 
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    28   6.1  
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    28   6.1  
03_02_0629 - 9961315-9961521,9962765-9963232                           28   6.1  

>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 23  SNSNYALLGGLRSVAQTI-SYEVRIALTFISSILLIICFDIYFFYLYQE 166
           +N NYA+  G+ S+ + +    VR  L F S + + IC+ ++   +Y+E
Sbjct: 401 TNDNYAVSSGILSLTKCLWKNVVRSPLVFFSIVDVSICYLLFIVVVYEE 449


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 23   SNSNYALLGGLRSVAQTISYEVRIALTFISSILLIIC 133
            S++ Y  L GL +  +  S  V+I L  +SSIL+++C
Sbjct: 1289 SDTIYLRLAGLDAGHRRKSNAVKIVLAVLSSILVVLC 1325


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 2   VIIAGWSSNSNYALLGGLRSVAQTISYEVRIALTFISSILLIICFD 139
           V IAGWS +++ AL+   R  AQT+ + ++       ++LL++  D
Sbjct: 274 VYIAGWSVSTDVALVRDPRRPAQTLGHLLKSKAGERVAVLLLVWDD 319


>03_02_0629 - 9961315-9961521,9962765-9963232
          Length = 224

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 289 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLISF 438
           ++ YRRG    +FLA      ++ ++ V I++GG+   F F  +L+ I F
Sbjct: 22  HVRYRRGDTLGLFLA------WVSLVPVFISLGGFVSHFLFRRELQGICF 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,024,791
Number of Sequences: 37544
Number of extensions: 78989
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)