Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1049
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 8   IAGWSSNSNYALLGGLRSVAQTIS-----YEVRIALTFISSILLI 127
           +  W+S  N  +   L +V QTIS     Y++R+   F    LL+
Sbjct: 19  LIAWASLENTGISDRLENVTQTISRILDGYDIRLRPNFGGEPLLV 63


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 509 IFTYFIKLFIIIF 547
           I+ YF+ LF+II+
Sbjct: 222 IWVYFVPLFLIIY 234


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 352 FIRMILVIINMGGYNL 399
           FIR++LVI+   GY L
Sbjct: 54  FIRIVLVILLRAGYVL 69


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 509 IFTYFIKLFIIIF 547
           I+ YF+ LF+II+
Sbjct: 98  IWVYFVPLFLIIY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,303
Number of Sequences: 438
Number of extensions: 1225
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)