Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1048
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    26   0.43 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   7.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.2  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 592 WINEIPTVPYLLSSET 639
           W+NEIPT+P  +  +T
Sbjct: 321 WLNEIPTMPVSIKDQT 336


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 148 PGTGPHPLPVQTRHA 104
           PG G H LPV + H+
Sbjct: 42  PGLGLHGLPVDSLHS 56


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 133 HPLPVQTRHAPVLRANPYS 77
           HPL + + H  +L  NP S
Sbjct: 335 HPLSLSSDHQAMLHHNPMS 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,619
Number of Sequences: 336
Number of extensions: 4390
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)