Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1048
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.8  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   5.8  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   5.8  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   7.6  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 319 DLTARKIRGRPENAGPDPVRNVDDFRECHIKY 224
           +L++  + G  ENA  DP+ +V D RE  + Y
Sbjct: 200 NLSSENLNGIIENAFEDPLNHVLDIREYDVPY 231


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 154  TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLP 47
            +RP T P P P + + APV + +    V  PI   P
Sbjct: 980  SRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPIPAQP 1015


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 782 VVFSATNARKRSP-TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GTVG 606
           +  +AT     SP + +T    PY A  + ++TGSSF AD  K +P+   ++ S   +  
Sbjct: 235 ITTNATYQNLPSPVSTSTTSSQPYGAFHQPATTGSSFVADKWK-MPMFTSNVTSAQPSAR 293

Query: 605 ISLIHSCAS 579
            S + S +S
Sbjct: 294 ASPVQSNSS 302


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 166 ARTSTRPGTGPHPLPVQTRHAPV 98
           A+ S  P   P PL +QTR AP+
Sbjct: 410 AQFSPYPAVAPSPLALQTRGAPI 432


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 767 TNARKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 648
           TN    SPT      + +N  L  +S   S  ADSP  +P
Sbjct: 165 TNLPAFSPTSVERRFTEWNVPLRETSPSPSETADSPNKLP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,169
Number of Sequences: 5004
Number of extensions: 73447
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)