Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1048
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    29   4.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   4.1  
Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical...    29   5.4  
Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    28   9.5  

>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = +2

Query: 590 NGLTRFPLFPIYYLAKPQPRERAW------ENQRGKKTLL 691
           NG  ++    +YY  KP   ER W      +NQ GK TLL
Sbjct: 841 NGRAKYTNLYLYYFGKPLDYERRWRYSLFLDNQDGKNTLL 880


>Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical
           protein T08G3.7 protein.
          Length = 943

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = +2

Query: 590 NGLTRFPLFPIYYLAKPQPRERAW------ENQRGKKTLL 691
           NG  ++    +YY  KP   ER W      +NQ GK TLL
Sbjct: 579 NGRAKYMNLYLYYFGKPLDYERRWRYSLFLDNQDGKNTLL 618


>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
           protein F36D3.5 protein.
          Length = 1152

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = +2

Query: 590 NGLTRFPLFPIYYLAKPQPRERAW------ENQRGKKTLL 691
           NG  ++    +YY  KP   ER W      +NQ GK TLL
Sbjct: 780 NGRAKYMNLYLYYFGKPLDYERRWRYSLFLDNQGGKNTLL 819


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 389 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 487
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 147 PAPXRIRFPSKPDTPRSSEPILIPKLRI 64
           P P  ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 389 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 487
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
           protein C01G10.1 protein.
          Length = 1204

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = +2

Query: 590 NGLTRFPLFPIYYLAKPQPRERAW------ENQRGKKTLL 691
           NG +++    +YY+ KP   E  W      +NQ GK TLL
Sbjct: 832 NGRSKYTNLYLYYVGKPVHYENRWRYSLFLDNQDGKNTLL 871


>AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical
           protein F41E6.14 protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 464 VISAQCSECQREEIQQARVNGGSNY 538
           +++A CS CQ  +IQ+A  NG   +
Sbjct: 587 LLNANCSNCQFNDIQKALTNGSDKF 611


>Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 249 SSTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRP 365
           S+T+  GSGPAF+  P+        ++ F+ + +   +P
Sbjct: 243 STTYHQGSGPAFALTPKTGENSAKFKYNFINNSYSHTQP 281


>Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical
           protein C17D12.3 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 249 SSTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRP 365
           S+T+  GSGPAF+  P+        ++ F+ + +   +P
Sbjct: 243 STTYHQGSGPAFALTPKTGENSAKFKYNFINNSYSHTQP 281


>AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 249 SSTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRP 365
           S+T+  GSGPAF+  P+        ++ F+ + +   +P
Sbjct: 243 STTYHQGSGPAFALTPKTGENSAKFKYNFINNSYSHTQP 281


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 116 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 9
           +P +  P +Q LF S+G  LP      I +   SSP
Sbjct: 19  SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,462,580
Number of Sequences: 27780
Number of extensions: 430004
Number of successful extensions: 1390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)