Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1048
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    36   0.044
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    31   0.72 
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.7  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   2.9  
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)...    29   2.9  
At2g26300.1 68415.m03156 guanine nucleotide binding protein (G-p...    29   5.1  
At1g76965.1 68414.m08961 glycine-rich protein                          29   5.1  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    28   8.9  

>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 550 GSQMPRHLISDAHEWINEIPTVPYLLSSETTAKGTGLGESAGKED 684
           G  +P + +SD +  INE+   P +++ E T K  GL ++ GK D
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTPQVIAKE-TVKENGLQKNGGKRD 113


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 246 KSSTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 389
           +++T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 176 RNNTYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 272 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 388
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 800 ENNGK*VVFSATNARKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 627
           +N G+ +V    + +      A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 84  KNVGEDLVVLLYHLQHACKRIASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 338

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 212 EAALY*NTNSLKRT*RTNIDQTRHRXASASRPNPTRP 102
           E   Y NT+  KR     ID   H+  ++S PNP  P
Sbjct: 103 EVKNYWNTHLKKRLIDDGIDPVTHKPLASSNPNPVEP 139


>At2g26300.1 68415.m03156 guanine nucleotide binding protein
           (G-protein) alpha-1 subunit / GP-alpha-1 (GPA1)
           identical to SP|P18064 Guanine nucleotide-binding
           protein alpha-1 subunit (GP-alpha-1) {Arabidopsis
           thaliana}
          Length = 383

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 598 NEIPTVPYLLSSETTAKGTGLGESAGKEDPVELDSSLA 711
           NE  +  Y+LSSE+ A G  L E  G+ D   L   +A
Sbjct: 99  NETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIA 136


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 150 DPAPXRIRFPSKPDTPRSSEPILIPKLRIQFAD 52
           DP    + FP KP+ P    P  +P+L + F D
Sbjct: 92  DPGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 764 NARKRSPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 642
           +A   SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 36  SAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,631,706
Number of Sequences: 28952
Number of extensions: 411309
Number of successful extensions: 1131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)