Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1047
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    25   7.2  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    25   7.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.5  

>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
           Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 293 KGDRGDELLKKYGDESKKANYLFVPYI-LVNGKESSIYAFILDVCNAFI 436
           +G  GDEL++K+G   K+     +      N  +     FI   CN  I
Sbjct: 96  RGGVGDELIRKFGRLEKETELELMDIAKTANSLQPGWNQFIFQTCNEII 144


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 272 SPIKRCAK--GDRGDEL-LKKYGDESKKANYLFVPYILVNGKES 394
           +P+K C    G   D L L +YG     ANYLF+   +  GK+S
Sbjct: 53  APLKICGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQS 96


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
 Frame = +3

Query: 453 VSMLFILLLAY--S*FLRRGSCKHN**CNVTSL-GYFFRLRRKC--KVCSKFIFHFNFAC 617
           + +LF+  + Y  + FL RG+ +     N+T + G++   +R+C  K+   FI  FN  C
Sbjct: 288 ILLLFLYKIRYPENFFLLRGNHEC---ANITRVYGFYDECKRRCNIKIWKTFINTFN--C 342

Query: 618 IPVKS 632
           +P+ S
Sbjct: 343 LPIAS 347


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 399 ILLSFPLTRMYGTNR*FAFLLSSPYFLRSSSPLSPFAQ 286
           IL   P +++  +++     LSS   L S SP+SPF++
Sbjct: 504 ILAEIPTSKLDNSSQKSPGKLSSKGLLNSFSPISPFSK 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,980
Number of Sequences: 5004
Number of extensions: 51032
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)