Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1047
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    47   1e-05
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    34   0.086
03_06_0692 + 35585445-35586008,35586222-35586560                       30   1.9  
01_05_0489 + 22652479-22653718,22653882-22654063,22654172-226542...    29   2.4  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    28   5.6  
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340...    28   7.5  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 36/60 (60%)
 Frame = +3

Query: 24  LNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGNITIAVMYNSCMMDL 203
           +++++ PYG A+   K+GK     +HG EEC+ N + ACAID   ++ +   +  C+ DL
Sbjct: 65  VDLSLVPYGNARV--KDGKISCQVEHGSEECFLNTVEACAIDAWPDLRVHFRFIYCVEDL 122



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +2

Query: 254 QFDIDSSPIKRCAKGDRGDELLKKYG--DESKKANYLFVPYILVNGKE--SSIYAFILDV 421
           + ++D  P+  C KG+RG +L  KYG   ++ +  + +VP+++V+G+        F   +
Sbjct: 137 KLNLDPKPVTDCYKGERGHQLSLKYGRQTDALQPPHKYVPWVVVDGQPLYEDYENFEAYI 196

Query: 422 CNAFINPPP 448
           C A+   PP
Sbjct: 197 CKAYKGHPP 205


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 34.3 bits (75), Expect = 0.086
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 12  LNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAI 146
           L+  +++ + P+G  + +  +G     CQHG EEC  N + AC I
Sbjct: 28  LSPVVDLRLVPFGNGR-VSPDGS--ITCQHGEEECQLNAIEACVI 69


>03_06_0692 + 35585445-35586008,35586222-35586560
          Length = 300

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 141 AIDVIGNITIAVMYNSCMMDLNQKN-HGSDDLAADACGN 254
           A+ V+G I   ++Y      LN +N +G DD+A D  GN
Sbjct: 72  AVCVVGVIVAYILYKKRTAALNNRNPNGGDDIADDFWGN 110


>01_05_0489 +
           22652479-22653718,22653882-22654063,22654172-22654279,
           22654364-22654467,22654570-22654657,22654760-22654870,
           22654955-22655020,22656740-22656799,22656869-22657411,
           22657646-22657765,22657845-22657964,22659083-22659136,
           22659236-22659331,22660580-22660681
          Length = 997

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 204 NQKNHGSDDLAADACGNNSILI 269
           NQK HG  D + D+ GNN +LI
Sbjct: 249 NQKGHGLLDQSGDSVGNNHVLI 270


>01_01_0128 -
           1167904-1168749,1168790-1168863,1169419-1169491,
           1171148-1171398,1171442-1171687,1172220-1172415,
           1172796-1172876,1172966-1173169,1173671-1173880,
           1173953-1174174,1174437-1174480,1174974-1175052,
           1175066-1175227,1175337-1175564,1175786-1175815,
           1175905-1176273,1176356-1176571,1177202-1177683,
           1177930-1177975
          Length = 1352

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 344 FCSHRRIS*EVRHLCHLLRNVLLAMNQY 261
           FC   + + E R LC ++RN L  +N+Y
Sbjct: 185 FCKQYKRTTEFRRLCEIIRNHLANLNKY 212


>09_02_0042 -
           3402424-3402534,3403242-3403345,3403448-3403562,
           3404344-3404391,3404519-3404608,3404819-3404893,
           3405001-3405153,3405695-3405779,3408051-3408121,
           3408243-3408293,3409037-3409453,3409529-3409660,
           3409779-3409892,3411113-3411179,3411264-3411397,
           3411486-3411701,3412627-3413418
          Length = 924

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -2

Query: 508 DPLLRN*LYASNRIKSIDTMRWRINKRIANV*DK 407
           DPL+R  L  +  + ++ + +WR+NKR+ ++ D+
Sbjct: 393 DPLVRQGLDRT-ALNTLGSTKWRVNKRVLSIVDR 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,823
Number of Sequences: 37544
Number of extensions: 299340
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)