Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1047
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  48   5e-06

>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +3

Query: 6   ERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGNITIAVMYN 185
           +++   ++I + PYG A+      K+ F CQHG  EC GN +  CAI+V+ NI+    + 
Sbjct: 53  QKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQGECEGNIIEVCAINVLKNISAYFPFI 112

Query: 186 SC 191
            C
Sbjct: 113 HC 114



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +2

Query: 254 QFDIDSSPIKRCAKGDRGDELLKKYGDESKK--ANYLFVPYILVNGKES 394
           Q  ID +PI++CA G +G+EL  + G E+      + +VP++ +NG+ +
Sbjct: 134 QLGIDYAPIEKCASGLQGNELEHEMGVETDALVPRHNYVPWVTLNGEHT 182


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 24/82 (29%), Positives = 40/82 (48%)
 Frame = +3

Query: 9   RLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGNITIAVMYNS 188
           ++   L+I++ P+G  K I+    +++ C +G EEC  N + ACA+    N  I   +  
Sbjct: 55  KIPNILDISMVPFGDGKEIKAKSGFQYYCTNGAEECLENLIQACAVATENNPEILTSFVG 114

Query: 189 CMMDLNQKNHGSDDLAADACGN 254
           C+   +    GS D  A  C N
Sbjct: 115 CLSYYD----GSVDKIAKYCSN 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,642,879
Number of Sequences: 59808
Number of extensions: 368966
Number of successful extensions: 982
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)