Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1047
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12870.1 68417.m02015 gamma interferon responsive lysosomal t... 40 0.001
At5g01580.1 68418.m00073 gamma interferon responsive lysosomal t... 40 0.002
At4g12960.1 68417.m02025 gamma interferon responsive lysosomal t... 36 0.018
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t... 35 0.041
At1g07080.1 68414.m00754 gamma interferon responsive lysosomal t... 35 0.041
At4g12890.1 68417.m02017 gamma interferon responsive lysosomal t... 35 0.054
At1g61550.1 68414.m06934 S-locus protein kinase, putative simila... 31 0.88
At4g21770.1 68417.m03150 pseudouridine synthase family protein c... 30 1.5
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 28 4.7
At1g72540.1 68414.m08388 protein kinase, putative similar to aux... 27 8.2
>At4g12870.1 68417.m02015 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 229
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 12 LNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGN 161
L+ ++ + P+G AK + ICQHG EEC N L AC I+ + N
Sbjct: 62 LDTITDVKLVPFGYAKV---SNNLTVICQHGEEECKLNALEACVINTLPN 108
>At5g01580.1 68418.m00073 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 233
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 24 LNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGNITIAVMYNSCMMDL 203
+++ + P+G A I +G +CQHG EC N +HACAI+ ++ Y C L
Sbjct: 60 IDLQLVPWGNA-AIRPDGT--ILCQHGEAECALNAIHACAINAYPDVMKHFGYIYCTEQL 116
Query: 204 NQKN 215
+N
Sbjct: 117 VLEN 120
>At4g12960.1 68417.m02025 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 233
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 27 NINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAI 146
++ ++P+G A E + CQHG EEC N L ACA+
Sbjct: 66 DLKLFPFGNA---ELSDNLTVTCQHGEEECKLNALEACAL 102
>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 231
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 12 LNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGNITIAVMYNSC 191
L+ ++ + P+G A + CQHG EEC N L ACAI N + + C
Sbjct: 66 LHTITDLKLIPFGNAHVSDD---LTVTCQHGEEECKLNALEACAIRTWPNQRLHYKFIRC 122
Query: 192 M 194
+
Sbjct: 123 V 123
>At1g07080.1 68414.m00754 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 265
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 24 LNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAID 149
+++++ P+G K N +CQHG EC+ + + ACAID
Sbjct: 72 VDLHLSPWGNTKLRSDN--VTAVCQHGAFECFLDTVEACAID 111
>At4g12890.1 68417.m02017 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 232
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 27 NINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGNITIAVMYNSCM-MDL 203
++ + P+G A I N CQHG EEC N L AC I + + + + C+ D
Sbjct: 73 DLKLVPFGNAH-ISNN--LTITCQHGEEECKLNALEACGIRTLPDPKLQYKFIRCVEKDT 129
Query: 204 NQ 209
N+
Sbjct: 130 NE 131
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 278 IKRCAKGDRGDELLKKYGD--ESKKANYLFVPYILVNGKE--SSIYAFILDVCNAF 433
I C GD +L+ Y S K + +VP++ +NGK + + + VC A+
Sbjct: 145 INDCYNGDLSQKLILGYAKLTSSLKPKHEYVPWVTLNGKPLYDNYHNLVAQVCKAY 200
>At1g61550.1 68414.m06934 S-locus protein kinase, putative similar
to receptor protein kinase [Ipomoea trifida]
gi|836954|gb|AAC23542; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 802
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 81 YEFICQHGPEECYGNKLHACAIDVIGNIT--IAVMYNSCMMDLNQKNHGSDDLA 236
YEF+ EECY + LH C+ I +++N +MD+ Q + G + L+
Sbjct: 352 YEFVSSGSAEECYQSCLHNCSCLAFAYINGIGCLIWNQELMDVMQFSVGGELLS 405
>At4g21770.1 68417.m03150 pseudouridine synthase family protein
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 472
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 27 NINIYPYGKAK---TIEKNGKY----EFICQHGPEECYGNKLHACAI 146
N + PYGKAK T+E+N K E+I +HG E G L AC I
Sbjct: 407 NPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQI 453
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 344 FCSHRRIS*EVRHLCHLLRNVLLAMNQY 261
FC + + E R LC ++RN L +N+Y
Sbjct: 185 FCKQYKRTTEFRRLCEIIRNHLANLNKY 212
>At1g72540.1 68414.m08388 protein kinase, putative similar to
auxin-regulated dual specificity cytosolic kinase
[Lycopersicon esculentum] gi|14484938|gb|AAK62821;
similar to serine/threonine protein kinase
gi|1066501|gb|AAA81538
Length = 450
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 21 YLNINIYPYGKAKTIEKN-GKYEFICQHGPEECY 119
++NI+I+ Y + KTI + KY F+ + G E Y
Sbjct: 66 FINIHIFTYEELKTITQGFSKYNFLGEGGFGEVY 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,655
Number of Sequences: 28952
Number of extensions: 256702
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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