Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1043
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.6  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 344 IKVLHLQFLHRGMHLAGRWIHW*EPSCLGRLLRSGIEA 457
           + VL  + +  G +   R + W EP  L RL+  G+ +
Sbjct: 70  VDVLLQEAVFEGTNRKNRVLQWREPEELRRLMDFGVRS 107


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 45  LKNSHENNPPSAFFCCKSREPV*NMYYH 128
           LKN   ++P      C+  EP    YYH
Sbjct: 97  LKNPSLSSPDECARACREGEPPRICYYH 124



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 489 SATMRRKSLPGIVAPS*TARATYRGSPEQSC 581
           SAT      P + +P   ARA   G P + C
Sbjct: 91  SATAELLKNPSLSSPDECARACREGEPPRIC 121


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 45  LKNSHENNPPSAFFCCKSREPV*NMYYH 128
           LKN   ++P      C+  EP    YYH
Sbjct: 97  LKNPSLSSPDECARACREGEPPRICYYH 124



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 489 SATMRRKSLPGIVAPS*TARATYRGSPEQSC 581
           SAT      P + +P   ARA   G P + C
Sbjct: 91  SATAELLKNPSLSSPDECARACREGEPPRIC 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,897
Number of Sequences: 336
Number of extensions: 4588
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)