Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1043
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    28   1.7  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   2.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   3.0  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    27   4.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   5.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   6.9  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   9.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.2  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 331 TRPMYKGSPSSVSPPGNAPG-GTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP 498
           T P    S S + PPGN PG   + P++     G P++  Y  FP +  PH   + P
Sbjct: 525 TAPSQPASLSLLGPPGNTPGHRNVPPILKRSSIGTPSQQAY--FPDA--PHNCHSVP 577


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 368 ETEDGEPLYIGRV-RHEGSLTTGKVQQSHGVCYISFGGQSLDSRTTKSS 225
           E E    +Y GRV + E SL T K+Q  H +  +   GQ+  +  T  S
Sbjct: 40  EKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTLGQNPAAAATNVS 88


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 334 RPMYKGSPSSVSPPGNAPGGTLDPLVGT 417
           RP+   SPSS S   +A  G ++P VGT
Sbjct: 187 RPVLDRSPSSFSQSRSAVSGNMNPGVGT 214


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 316 LPSWRTRPMYKGSPSSVSPPGNAPGGTLD 402
           LP  RT   Y+ +PSS     NAP  T +
Sbjct: 35  LPQDRTTSTYRATPSSADAGYNAPSSTFE 63


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 356 GEPLYIGRVRHEGSLTTGKVQQSHGVCYISFGGQSLDSRTTKSSCPNYYH 207
           G PL + ++ + G    G + +++    +S+  QS DS  +  SC N+Y+
Sbjct: 558 GSPLGLFQMLN-GKKIAGPIPKTNLTRSLSYSEQSFDSGVSILSCQNFYN 606


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 520 GSWHLREQHEPHTEVLLSSPVLPQRRQEV 606
           G  HL+EQ     +  +S P+LP ++ E+
Sbjct: 98  GVKHLQEQSSKEIKNPISQPILPNKKDEI 126


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +3

Query: 234  RSPGIQALSTKRNVADAVRLLNLAGGEATFVAD-TANV*RFSIFSFSTGECTWRDVGSTG 410
            R+PG   LST        R L  A G++ F++   AN   FS    +T     R++ +  
Sbjct: 1872 RAPGADVLSTSHFATSMSRDLGKANGKSNFLSSKLANALSFSTTHPATKRWERREISNFN 1931

Query: 411  RNPVVWAAY*DLVLRLSMFNTTPWNVS 491
               +V          L+ +   PW ++
Sbjct: 1932 YLQIVNTLAGRTYNDLTQYPVFPWVIA 1958


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 440 RSGIEAFHVQYHPMERKRNHEK 505
           R G+  F  +   +ERKR HEK
Sbjct: 114 RDGVSPFSPEGEGLERKREHEK 135


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 313  RLPSWRTRPMYKGSPSSVS 369
            R+P+W  R  Y+GSP  +S
Sbjct: 1082 RVPAWCDRICYRGSPDYIS 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,369
Number of Sequences: 5004
Number of extensions: 70724
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)