Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1043
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0927 - 22642670-22643023 31 1.0
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 29 3.1
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 29 4.1
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 29 4.1
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 28 7.2
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 28 7.2
01_05_0285 - 20382305-20382563,20383315-20384504 28 7.2
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 28 9.5
04_04_0225 + 23745404-23747788 28 9.5
>07_03_0927 - 22642670-22643023
Length = 117
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -3
Query: 497 GCAYVP-WGGIEHGKPQY---QILVGGPNNWVPTSGSNVPPGAFPGGET 363
G YVP G++H P Q L G + WVP G VP PG +
Sbjct: 68 GSTYVPDITGVDHSVPAAEHGQFLPGADDTWVPNPGFEVPNPFQPGSSS 116
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -2
Query: 606 YLLAPLWEDRTAQENLCMWLVLFTKVPRSLVNSSFSWLRLRSMG 475
YLLA +W D+T + L + T+VP +V S S L+L S G
Sbjct: 59 YLLA-VWFDKTVDKTLAWYAKTNTQVPELVVVPSGSRLQLSSNG 101
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 304 PVVRLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSI-PPH 480
P LPSW + PM PSS N G T+ P+ + PP+ + P + PPH
Sbjct: 189 PGASLPSWNSSPM----PSS----ANGAGLTMPPMYWPGFYTPPSGFPHLQQPPFLRPPH 240
Query: 481 G 483
G
Sbjct: 241 G 241
>03_02_0630 +
9964593-9964738,9965548-9965603,9965895-9966745,
9966848-9967046,9967246-9967425,9967591-9967967,
9968625-9968765
Length = 649
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 355 ENLYTLAVSATKVASPPARFNSLTASATFRLV 260
EN+ T+ SA+K+A+PPA S A++ ++
Sbjct: 231 ENIDTITDSASKIATPPATITSFGAASPVSVI 262
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 413 PTSGSNVPPGA--FPGGETEDGEPLYIGRVRHEGSLTTGKVQ 294
P G PPG +PG + G+P + H+G+ G Q
Sbjct: 8 PGRGGGAPPGMTPWPGPPPQPGQPAVVYTALHQGAYQPGVAQ 49
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 376 PVEKLKMENLYTLAVSATKVASP-PARFNSL 287
P+E KM+NL TL +S VA P P+ SL
Sbjct: 311 PIELAKMKNLDTLDLSCNMVAGPIPSAIGSL 341
>01_05_0285 - 20382305-20382563,20383315-20384504
Length = 482
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 387 WRDVGSTGRNPVVWAAY*DLVLRLSMFNTTPWNVS 491
W +VGS V+ AY +VLRL + T W V+
Sbjct: 179 WANVGSAAAQVVMPVAYDAVVLRLGVPVTVAWRVT 213
>08_01_0987 +
9979651-9979746,9979818-9980058,9980947-9981090,
9981253-9981313,9981603-9982061,9982472-9982529,
9983579-9983839
Length = 439
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 701 VQCSCYRCSRWQWLCARSAEI 763
VQC C+ CSR W + EI
Sbjct: 85 VQCKCFMCSRQGWKSKKGNEI 105
>04_04_0225 + 23745404-23747788
Length = 794
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2
Query: 606 YLLAPLWEDRTAQENLCMWLVLFTKVPRSLVNSSFSWLRLRSMG 475
YLLA +W D+T +++ + T+VP ++ S S L+L S G
Sbjct: 59 YLLA-VWFDKTVNKSMAWYAKTNTQVPEVVLVPSGSRLQLSSNG 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,871,672
Number of Sequences: 37544
Number of extensions: 514218
Number of successful extensions: 1490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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