Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1043
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026) 35 0.064
SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.084
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24) 31 1.0
SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023) 29 3.2
SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) 28 7.3
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15) 28 9.7
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)
Length = 338
Score = 35.1 bits (77), Expect = 0.064
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -3
Query: 410 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQSHGVCYISFGGQSL 249
TSG F GE GE G VR + TTG+ Q+ GV S G L
Sbjct: 126 TSGEVRQGETFASGEVRQGETFTSGEVRQGETFTTGEEQKGRGVITTSAGNHGL 179
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 410 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 291
TSG F GE GE G VR + T+G+V+Q
Sbjct: 71 TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 110
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 410 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 291
TSG F GE GE G VR + T+G+V+Q
Sbjct: 82 TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 121
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 410 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 291
TSG F GE GE G VR + T+G+V+Q
Sbjct: 93 TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 132
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 410 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 291
TSG F GE GE G VR + T+G+V+Q
Sbjct: 115 TSGEVRQGETFTSGEVRQGETFASGEVRQGETFTSGEVRQ 154
>SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 34.7 bits (76), Expect = 0.084
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 344 YIGRVRHEGSLTTGKVQQSHGV-CYISFGGQSLDSRTTKSSCPNYYHSAESGTAYIRLHQ 168
++ H+ L V + C I F QSL+SR C YHS T+ IR
Sbjct: 659 FLASEEHQDGLHHSLVSMTQNPECSIDFDSQSLESRPWMECCVMSYHSTPEDTSKIRRSV 718
Query: 167 KY 162
KY
Sbjct: 719 KY 720
>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
Length = 346
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 313 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 438
+ P+ T P GSP++ +PP AP T P V PPT
Sbjct: 289 KTPAATTPPT--GSPAATTPPTAAPAATTPPTVAPAATTPPT 328
>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +1
Query: 55 VMKIIHHLLFFAANQESRYETCIIMNTSFEINNYFVYFWCNLI 183
+ +++HLL+F NQ C+ + S + W N++
Sbjct: 452 ITMLLYHLLYFLVNQSDTRALCVAVAVSLHFALLSAFCWMNVL 494
>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
Length = 547
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 452 QYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGK 300
+Y+I GG + PG FPGG+ E ++ VR E + GK
Sbjct: 151 RYRIETGGGQGGTHNASYGTYPGIFPGGKGATMEGIFQITVRTELKIVIGK 201
>SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)
Length = 172
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 313 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 438
+ P+ T P G+P++ +PP AP T P PPT
Sbjct: 114 KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 153
>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 313 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 438
+ P+ T P G+P++ +PP AP T P PPT
Sbjct: 181 KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 220
>SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 313 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 438
+ P+ T P G+P++ +PP AP T P PPT
Sbjct: 4 KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 43
>SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 313 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 438
+ P+ T P G+P++ +PP AP T P PPT
Sbjct: 67 KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 106
>SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1526
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 588 WEDRTAQENLCMWLVLFTKVPRSLVNSSFS 499
W R +W VL +P S+VNS+FS
Sbjct: 507 WSGRIVGSACALWGVLMITLPISIVNSNFS 536
>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
Length = 582
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 386 GAFPGGETEDGEPLYIGRVRHEGSLTTGKVQ 294
G FPGGE DG +IG EGS VQ
Sbjct: 143 GLFPGGERSDGGQHFIG--EPEGSSVAAAVQ 171
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 476 GGIEHGKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGR 333
G ++ G P + G P+ VP+ P G P G DG+P Y+ +
Sbjct: 990 GQVQPGYPG-AMTPGAPSPGVPSPTGLPPSGPPPTGPPADGDPEYLSQ 1036
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,470,661
Number of Sequences: 59808
Number of extensions: 554875
Number of successful extensions: 1423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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