Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1043
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l...    28   6.5  
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p...    28   6.5  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 349 GSPSSVSPPGNAPGG-TLDPLVGTQLFGPPTKIWY*GF-PCSIPPHGT*AQP 498
           G+P S  PP   PGG    P  G   +GPP      GF P   PP G    P
Sbjct: 418 GAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPT----GFPPVGAPPPGAAGAP 465


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 434 GGPNNWVPTSGSNVPPG--AFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 291
           G P N  P+ G+  PPG    PGG   DG+P   G     G++T    QQ
Sbjct: 190 GAPGN-TPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQ 238


>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
           lineage protein 49 protein.
          Length = 1042

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 692 GGCVQCSCYRC-SRWQWLCARSAEIVMR 772
           G C+QCS  +C + +   CAR + +VMR
Sbjct: 320 GACIQCSETKCTASFHVTCARDSGLVMR 347


>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
           protein LIN-49 protein.
          Length = 1042

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 692 GGCVQCSCYRC-SRWQWLCARSAEIVMR 772
           G C+QCS  +C + +   CAR + +VMR
Sbjct: 320 GACIQCSETKCTASFHVTCARDSGLVMR 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,046,531
Number of Sequences: 27780
Number of extensions: 417525
Number of successful extensions: 1243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)