Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1043
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.34 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.34 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 359 DGEPLYIGRVRHEGSLTTGKVQQSHGV-CYISFGGQ-SLDSRTTKSSCPNYYHSAESGTA 186
           DGEP+ I    H G + TG +   H +  Y  FG   +L SRT  +  P   + +E    
Sbjct: 504 DGEPVKITIGIHSGEVVTGVI--GHRMPRYCLFGNTVNLTSRTETTGEPGKINVSEDAYR 561

Query: 185 YI 180
           Y+
Sbjct: 562 YL 563



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 568 GEPLYVARAVHEGATIPGKLFLLMVALTFHGVVLNMES 455
           GEP+ +   +H G  + G +   M      G  +N+ S
Sbjct: 505 GEPVKITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 542


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 359 DGEPLYIGRVRHEGSLTTGKVQQSHGV-CYISFGGQ-SLDSRTTKSSCPNYYHSAESGTA 186
           DGEP+ I    H G + TG +   H +  Y  FG   +L SRT  +  P   + +E    
Sbjct: 504 DGEPVKITIGIHSGEVVTGVI--GHRMPRYCLFGNTVNLTSRTETTGEPGKINVSEDAYR 561

Query: 185 YI 180
           Y+
Sbjct: 562 YL 563



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 568 GEPLYVARAVHEGATIPGKLFLLMVALTFHGVVLNMES 455
           GEP+ +   +H G  + G +   M      G  +N+ S
Sbjct: 505 GEPVKITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTS 542


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 452 QYQILVGGPNNW-VPTSGSNVPPGAFPGGETEDGEPLYIGRVRHE 321
           Q   L  G   W +P+ G +  PG     E ++     IG+ +HE
Sbjct: 229 QPTFLCKGDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFKHE 273


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 54  SHENNPPSAFFCCKSREP 107
           SHENN P+   C   + P
Sbjct: 870 SHENNQPTMNKCSDRKRP 887


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 373  PGNAPGGTLDPLVG 414
            PGN   GT+ P VG
Sbjct: 1751 PGNGHSGTMGPPVG 1764


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 130 NTSFEINNYFVYFWCN 177
           +TSF + NYF++ + N
Sbjct: 13  STSFILINYFIFLYFN 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,573
Number of Sequences: 438
Number of extensions: 5043
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)