Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1043
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41250.1 68418.m05013 exostosin family protein contains Pfam ...    30   1.5  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    30   1.5  
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    30   2.0  
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    29   4.5  
At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family...    28   6.0  
At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family...    28   6.0  
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    28   7.9  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    28   7.9  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    28   7.9  
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to...    28   7.9  

>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 561

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 514 YQGSWHLREQHEPHTEVLLSSPVLPQRRQEVLDLLK 621
           YQ +WHL E H  ++ V +S   + ++R  V+++LK
Sbjct: 473 YQYAWHLPEDHRKYS-VYISEQDVKEKRVNVVEILK 507


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
            similarity to flagelliform silk protein [Nephila
            clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 361  SVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPHG 483
            S+SP G +P     P+ GT + GPP +    G P  + P G
Sbjct: 965  SISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFG 1005


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 490 AQP*EGRVYQGS--WHLREQHEPHTEVLLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVR 663
           A P + R   G   + L EQ EP +   ++  +L   + EVL LL+     +   TE + 
Sbjct: 584 AAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMD 643

Query: 664 FLRSLQGSQGG 696
            LRS+   Q G
Sbjct: 644 VLRSVAQQQAG 654


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -3

Query: 464 HGKPQYQILVGGP----NNWVPTSGSNVPPGAFPGG 369
           H  P      GGP    +  VP+SG++VPP A  GG
Sbjct: 194 HALPPKSTAAGGPLTSPSRGVPSSGNSVPPPANSGG 229


>At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 199

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 488 YVPWGGIEHGKPQYQILVGGPNNWVPTSGSNVPPGAFP 375
           Y P G  +H  PQ     G P N  P++ S  PPGA+P
Sbjct: 156 YPPSGYPQH-PPQGYPPSGYPQNPPPSAYSQYPPGAYP 192


>At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 255

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 488 YVPWGGIEHGKPQYQILVGGPNNWVPTSGSNVPPGAFP 375
           Y P G  +H  PQ     G P N  P++ S  PPGA+P
Sbjct: 212 YPPSGYPQH-PPQGYPPSGYPQNPPPSAYSQYPPGAYP 248


>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related contains
            weak similarity to Swiss-Prot:Q9NZW4 dentin
            sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 379  SPVEKLKMENLYTLAVSATKVASPPARFNSLTASATFRLV 260
            SP  K K   +YT  +     + PPAR  SL AS+ +  V
Sbjct: 1328 SPPIKSKRRLVYTTQLMQQLCSPPPARVISLVASSNYEFV 1367


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -3

Query: 470  IEHGKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 291
            I +G P Y  L    +  +  + SN    +F G ETE+G+  ++  V  + +   G  Q 
Sbjct: 1144 ISNGSPSYAELYFQEDGILTLATSNSNSLSFSGLETEEGKWHHLAVVHSKPNALAGLFQA 1203

Query: 290  SHGVCYI 270
            S    YI
Sbjct: 1204 SVAYVYI 1210


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 10  NIVRCEKTSKLN*RIVMKIIHHLLFFAANQESR-YETCIIMNTSFEINNYFVYFWCN 177
           N + C K   L  +I  K   H L  +  +E R  E C I   S +     V++WCN
Sbjct: 484 NFIVCFKCVTLPYKIKYKHDTHFLTISFGEEVREQEWCEICERSLKDTCTKVFYWCN 540


>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
           glycine-rich protein; atGRP (GI:259447) [Arabidopsis
           thaliana]
          Length = 145

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
 Frame = -3

Query: 500 HGCAYVPWGGIEHGKPQYQILVGGPNNWVPTSGSNVPPGAF---PGGETEDGEPLYIGRV 330
           +G  Y   GG + G   YQ   GG  N+    G+    G      GG  + G   Y G  
Sbjct: 47  NGGNYNNGGGYQGGGGNYQ---GGGGNYQGGGGNYQGGGGRYQGGGGRYQGGGGRYQGGG 103

Query: 329 RHEGSLTTGKVQQSHGVCYISFGGQS 252
             +G   +G     HG CY  + G S
Sbjct: 104 GRQGGGGSGGSYCRHGCCYRGYNGCS 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,131,047
Number of Sequences: 28952
Number of extensions: 394223
Number of successful extensions: 1093
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)