Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1034
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    49   7e-07
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   2.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   2.0  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    27   2.6  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   6.0  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.9  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
 Frame = +2

Query: 347 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAEFK 517
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +      + +
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 518 MVFGPSNIYWLLVALSEHSSSQEVNFASTW-MVFGMIGGFCYIVIQLILIIDFAHSWAE 691
               P  I  L   L   S      F S W  +  ++G   +IV  L+L++DFAH+WAE
Sbjct: 127 NGLWPFKIV-LWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 226 ELVQDGHAEQHSE---QAVLPQQHASCAAEQRPNTAPISSF 113
           +L+ D  A QH     Q  +P   AS +    P  AP+SSF
Sbjct: 174 KLLPDQSARQHQVLVGQTAIPTSEASSSINNTPLQAPVSSF 214


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +2

Query: 128  CSVGPLFCSTAGVLLWQHCLFTMLFSMSILHQFHLLPSYVCTMLVLVTIVCCITLAPGLH 307
            C++  L C    + L    L   LFS S    F+ LP  +C +  ++ ++  + LAP   
Sbjct: 854  CAMKTLICLRGFLNLKPSELERELFSRSP-DLFNCLPRLLCCIAPILQLLSALILAPWPS 912

Query: 308  NELQKLPFCTNATD 349
                 L +  N+TD
Sbjct: 913  ETPSLLAYMINSTD 926


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 537 FDGPKTILNSALGSLEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQS-TLKFPG 370
           FDG  T+       L D  P+I   I    R +  +IL  A YP+ + Q  T +F G
Sbjct: 146 FDGDVTLYEDGQPLLPD-NPVISRLIQLLSRGIYVIILTAAGYPSRTGQEYTDRFSG 201


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 530 PSNIYWLLVALSEHSSSQEVNFAST 604
           P NI+W  V  SE SS   +  A T
Sbjct: 557 PKNIFWAFVKASESSSEHPIGKAIT 581


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 2   TVYFYVRLIISKYTYLLLGM*IVVHKTDNTINTK*ELKTRNGCS 133
           T   Y+R +IS+   + L M +++HK    I+   E   RN  S
Sbjct: 409 TTEMYLRQVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLS 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,164
Number of Sequences: 5004
Number of extensions: 62089
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)