Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1034
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106... 56 4e-08
06_01_1110 - 9137529-9137918,9138011-9138112,9138289-9138381,913... 29 4.7
04_03_0587 - 17580954-17581080,17581088-17581272 28 6.2
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 28 6.2
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 28 8.2
12_02_0001 - 12066231-12066341,12066745-12066825,12067056-120671... 28 8.2
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 28 8.2
>02_05_1040 -
33709588-33709880,33709960-33710200,33710498-33710672,
33710781-33710892,33711906-33712145,33712253-33712436
Length = 414
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 416 AVYRITFATCLFFLLMALIMIGVKSSKDPRAEFKMVFGPSNIY-WLLVALSEHSSSQEVN 592
AV R++ +FF ++A+IM G+K KDPR + + I+ W+++ V
Sbjct: 79 AVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFFVPNGV- 137
Query: 593 FASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIW 697
S + G ++++Q++L++DF H W E W
Sbjct: 138 -VSFYESISKFGSGLFLLVQVVLLLDFVHGWNENW 171
>06_01_1110 -
9137529-9137918,9138011-9138112,9138289-9138381,
9138465-9138719,9139002-9139258,9139341-9139445,
9139555-9139834,9139932-9140212,9140362-9140482
Length = 627
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 522 TILNSALGSLEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPV 358
++ + A+G + P+ ++R K+HVA +L T + A +Q+ + S V
Sbjct: 149 SVTHHAIGGKRVVAPLQPGKVTRSKKHVAPDVLATREVLVADTQAEIPIQATSEV 203
>04_03_0587 - 17580954-17581080,17581088-17581272
Length = 103
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 522 TILNSALGSLEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPVTVLSV 343
T NS S+ L +IN + K +VA+ + K TA S++ PG +V V
Sbjct: 30 TATNSVSFSVTTLPGFLINNLDTKPNNVADSVRRAVKVVTAEMDSSVGMPGLLDDSVAVV 89
Query: 342 A 340
A
Sbjct: 90 A 90
>04_03_0554 -
17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -3
Query: 579 DEECSDNATNNQ*IFDG--PKTILNSALGSLEDLTPIIINAISRKKR 445
DE+ D+ TN +FDG P ++L++ S +P++ I R++R
Sbjct: 177 DEDIFDDDTNESDMFDGQAPSSMLDAGTTSFGSPSPLLDPNIRRRQR 223
>12_02_1155 +
26541137-26541142,26541244-26542623,26542730-26542852,
26542996-26543168,26543332-26543572,26543931-26544023,
26544092-26544232,26544358-26544450,26544633-26544837,
26544993-26545078,26545532-26545620,26545736-26545820,
26545898-26545954,26546319-26546399,26547130-26547321
Length = 1014
Score = 27.9 bits (59), Expect = 8.2
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = -3
Query: 645 TM*QKPPIIPNTIHVEAKLTSW----DEECSDNATNNQ*IFDGPKTILNSALGSLEDLTP 478
+M Q P + P T H E++LT + E + I G + I NS SLEDL+
Sbjct: 471 SMPQSPLLTPRTSHAESQLTKHKAFVELENFQQVESLMTIARGIERIKNSEYNSLEDLSS 530
Query: 477 II--INAISRKKRHVANVI 427
+ +NA+ ++ A V+
Sbjct: 531 YLEDLNAVIDTRKVDALVV 549
>12_02_0001 -
12066231-12066341,12066745-12066825,12067056-12067136,
12068017-12068097,12068337-12068417,12068492-12068572,
12068647-12068727,12070748-12070828,12070903-12070983,
12071551-12071631,12072036-12072116,12072519-12072599,
12072839-12072919,12073468-12073548,12074108-12074188,
12074428-12074508,12075076-12075156,12075396-12075476,
12075561-12075641,12076356-12076436,12076676-12076756,
12077326-12077406,12077811-12077891,12078131-12078211,
12078286-12078366,12079586-12079666,12079906-12079986,
12081341-12081421,12081793-12081873,12083074-12083154,
12083714-12083794,12084034-12084114,12084354-12084434,
12084674-12084754,12084829-12084909,12084984-12085064,
12085304-12085384,12087109-12087189,12087429-12087509,
12087584-12087664,12089204-12089284,12090339-12090419,
12090659-12090739,12091621-12091701,12092754-12092834,
12093074-12093154,12093155-12093310,12093550-12093630,
12094454-12094512,12094610-12094691,12096312-12096392,
12096789-12096869,12097768-12097907,12099296-12099377,
12100185-12100265,12100999-12101079,12101484-12101564,
12101814-12101894,12102628-12102708,12103744-12103824,
12104869-12104949,12105189-12105269,12105509-12105589,
12106322-12106402,12106477-12106557,12107448-12107528,
12108050-12108145,12109578-12109584,12110097-12110293
Length = 1929
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 464 ALIMIGVKSSKDPRAEFKMVFGPSNIYWL----LVALSEHSSSQEVNFASTWMVFGMIGG 631
A+ G+K K + M+FG N+YW+ + + + + +F + W V G
Sbjct: 602 AMFFTGMKEFKKHQ---NMIFGHINVYWVGAMFFTGMKKVQQAPKRDFWTYWRVLGAFVA 658
Query: 632 FCYIVIQLI 658
+IVI+++
Sbjct: 659 ENHIVIRVL 667
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 301 SGS*SDTAHNSYQHQHSAYIRREEVELVQDGHAEQHSEQAVLP 173
S S D +S+ H S Y+ REE E++ E+ + + V+P
Sbjct: 159 STSGGDEDKDSFMHLVSRYLIREEKEMIDWNKVERPTPEMVVP 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,115,014
Number of Sequences: 37544
Number of extensions: 389501
Number of successful extensions: 1139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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