Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1034
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     83   2e-16
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     81   6e-16
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     62   4e-10
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.003
SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      29   4.8  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)                     28   6.3  
SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
 Frame = +2

Query: 416 AVYRITFATCLFFLLMALIMIGVKSSKDPRAEFKMVFGPSNIYWLL-VALSEHSSSQEVN 592
           ++YR+ FA  +F+ LMA ++IGV++ +D RA+F   F    I  LL +        +   
Sbjct: 500 SLYRVCFAMAMFYFLMAFVLIGVRNEEDVRAKFHNGFWYIKILLLLGLTAGSFFIPRHGQ 559

Query: 593 FASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIW 697
           F + WM  G+ GGF +I+IQL+L+IDFAH W E W
Sbjct: 560 FHAFWMYIGLAGGFLFILIQLLLLIDFAHCWNESW 594


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
 Frame = +2

Query: 257  LVLVTIVCCITLAPGLHNELQKLPF-CTNATDSTVTGLLPGNFKVDCDEAVGYLAVYRIT 433
            L +  ++  ITL P +   + K+P+ C   T   +           CD  VGY A YRI 
Sbjct: 781  LCVGNLLSFITLVPDMRYYIGKIPYLCDTVTSPRM-----------CDSLVGYSAAYRIY 829

Query: 434  FATCLFFLLMALIMIGVKSSKDPRAEFKMVFGPSNIYWL-LVALSEHSSSQEVNFASTWM 610
            FA  +F+ L++++   V S+K  RA     F    + +L L+ +          F   WM
Sbjct: 830  FAMTVFYFLLSILTYNVSSTKQFRARIHNGFWYIKLSFLSLLLIVAFYIPFTKMFGMVWM 889

Query: 611  VFGMIGGFCYIVIQLILIIDFAHSWAEIW 697
              G+ GGF +I++Q++L+IDF HSW+  W
Sbjct: 890  YVGLTGGFMFILLQIVLVIDFGHSWSASW 918


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 31/93 (33%), Positives = 50/93 (53%)
 Frame = +2

Query: 407 GYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAEFKMVFGPSNIYWLLVALSEHSSSQE 586
           GYLAVYRI      F++L A+++  V++  DPRA  +        + L   L   +    
Sbjct: 394 GYLAVYRICLTMATFYILFAVVLYNVRTYADPRALIQNGLWVVK-FGLFFGLLVCTFFIP 452

Query: 587 VNFASTWMVFGMIGGFCYIVIQLILIIDFAHSW 685
           + F+  W   G++G F +IV+Q+IL++DF   W
Sbjct: 453 LEFSRVWTYVGLLGTFFFIVMQMILLVDFTRVW 485


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = +2

Query: 392 CDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRA--EFKMVFGPSNIYWLLVALS 565
           CD  VG++ +YRI F   +FFL MA++           A  E  + F   N++ L V LS
Sbjct: 61  CDLLVGHILLYRIYFGMFVFFLFMAVVNCQASFCMGYSALLENGLWFLKWNLFCLSVLLS 120

Query: 566 EHSSSQEVNFASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIW 697
                 E+   +  M  G       + ++++LIIDFA +    W
Sbjct: 121 LLLPEGEI--GNILMHTGWFSTIIVMFMEVLLIIDFAKNSNFAW 162


>SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 247 YIRREEVELVQDGHAEQHSEQAVLPQQHASCAAE----QRPNTAPIS 119
           Y  R +VE +  G   QH  QA  PQQ A  AA     Q P+TAP++
Sbjct: 41  YTIRVDVEFLHVGQKLQHKLQAAEPQQQARFAAHEAAVQAPSTAPMA 87


>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1829

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 280 AHNSYQHQHSAYIRREEVELVQDGHAEQHSEQAVLPQQHASCAAEQ 143
           AH ++++  ++ I   E EL++D   E  S+Q  L Q+HA+  +E+
Sbjct: 181 AHQTHKYDFTSNIIDREKELIKDKIEEVKSKQEDLSQEHANVLSEK 226


>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 277 HNSYQHQHSAYIRREEVELVQDG-HAEQHSEQAVLPQQHASCAAEQRPNTAPISSF 113
           H+ Y  QHS+Y  +     VQ   +  QHS       QH+SC  +  P T   S +
Sbjct: 52  HSPYTVQHSSYTVQHSPYTVQHSPYTVQHSPYTA---QHSSCTVQHSPYTVQHSPY 104


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 167 LLWQHCLFTMLFSMSILHQFHLLPSYVCTMLVLVTIVCCITLAPG 301
           LL   CL   L  M  L    L+  Y+C  L+++  +CCI L  G
Sbjct: 118 LLVMDCLCFTLLVMCYLCCTLLVMDYLCFTLLVMGYLCCILLVMG 162


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 126 PFLVFNSHFVLIVLSVLCTTIYIPSNKYVY 37
           PF VF+SHF + +     T +YI    +VY
Sbjct: 633 PFEVFSSHFTIDLFETRSTGLYISKAGFVY 662


>SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)
          Length = 686

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 670 INDKNE-LDNNVAEASNHSKHHPCRSKID 587
           + D +E L N + EAS  SKHHP +   D
Sbjct: 446 VQDNSEWLQNGLVEASQGSKHHPHKGNRD 474


>SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 596 ASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIW 697
           A  + + G+IG FC  V+   LII    S+ + W
Sbjct: 31  AILFKIAGVIGSFCVAVLPFALIIPLRKSFFDAW 64


>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = -2

Query: 271 SYQHQHSAYIRREEVELVQDGHAE--QHSEQAVLPQQHASCAAEQRPNTAPISS 116
           S  H H+  +    ++ +  GH +   HS    L   H  C A  RP    + +
Sbjct: 308 SLAHSHTKGLAHSHIKGLAHGHTKGLAHSHTKGLAHSHTKCLAHSRPREKAVQA 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,314,433
Number of Sequences: 59808
Number of extensions: 462634
Number of successful extensions: 1229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)