Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1034
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.52 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    25   0.52 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 172 QQHASCAAEQRPNTAPISSF*LSLCVDCVVCFMYY 68
           ++H +CA +  P  A +SS  +S  V C+V    Y
Sbjct: 179 EEHPTCALDLTPTYAVVSSS-ISFYVPCIVMLGIY 212


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 605 WMVFGM-IGGFCYIVIQLILII 667
           W + G  +GGFC+ +IQ+ +II
Sbjct: 3   WRMTGTWVGGFCHSIIQIPVII 24


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 533 SNIYWLLVALSEHSSSQEVNFASTWMVFGMIGG-FCYIVIQLILIIDFAH 679
           SN+   ++  ++ S+ +    AS   +FG+IGG +  + +Q+  ++   H
Sbjct: 44  SNLDMSVLECADRSAPRVKKTASAGPIFGVIGGSYSSVSLQVANLLRLFH 93


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 533 SNIYWLLVALSEHSSSQEVNFASTWMVFGMIGG-FCYIVIQLILIIDFAH 679
           SN+   ++  ++ S+ +    AS   +FG+IGG +  + +Q+  ++   H
Sbjct: 134 SNLDMSVLECADRSAPRVKKTASAGPIFGVIGGSYSSVSLQVANLLRLFH 183


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 428 ITFATCLFFLLMALIMIGV 484
           ITFA+ L F+L+  I + V
Sbjct: 82  ITFASFLLFILLVQIAVAV 100


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 465 AISRKKRHVANVIL*TAKYPTASSQSTLKFPGN 367
           A +RKK   ++     A  PT  S  T KFP N
Sbjct: 338 AFARKKTDYSSFGKILATEPTLFSNVTPKFPRN 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,584
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)