Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1034
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06170.1 68416.m00709 TMS membrane family protein / tumour di...    56   2e-08
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di...    56   2e-08
At5g38380.2 68418.m04636 expressed protein                             30   1.7  
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin...    29   3.0  
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.9  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    29   3.9  
At2g36190.1 68415.m04442 beta-fructosidase, putative / beta-fruc...    28   5.2  
At5g53620.2 68418.m06662 expressed protein                             28   6.8  
At5g53620.1 68418.m06661 expressed protein                             28   6.8  
At4g28080.1 68417.m04027 expressed protein                             28   6.8  

>At3g06170.1 68416.m00709 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 409

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
 Frame = +2

Query: 416 AVYRITFATCLFFLLMALIMIGVKSSKDPRAEFKM-VFGPSNIYW-LLVALSEHSSSQEV 589
           AV R++F   LFF + ALIMIGVK   D R  +    +G   I W LLV L     +  V
Sbjct: 76  AVLRVSFGNFLFFAIYALIMIGVKDQNDRRDSWHHGGWGLKMIVWFLLVVLMFFVPNVIV 135

Query: 590 NFASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIW 697
           +   T   FG  G F  +++Q++L++D  H+W + W
Sbjct: 136 SLYGTLSKFG-AGAF--LLVQVVLLLDATHNWNDSW 168


>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 412

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = +2

Query: 416 AVYRITFATCLFFLLMALIMIGVKSSKDPRAEFKM-VFGPSNIYW-LLVALSEHSSSQEV 589
           AV R++    LFF +++++MIGVK+ KDPR       +    I W +LV       ++ +
Sbjct: 79  AVLRVSLGNFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMKIICWCILVIFMFFLPNEII 138

Query: 590 NFASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIW 697
           +F  +   FG   GF ++++Q++L++DF H W + W
Sbjct: 139 SFYESMSKFG--AGF-FLLVQVVLLLDFVHGWNDTW 171


>At5g38380.2 68418.m04636 expressed protein
          Length = 336

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 428 ITFATCLFF-LLMALIMIGVKSSKDPRAEFKMVFGPSNIYW--LLVALSEHSSSQEVNFA 598
           IT ATC  F + M  ++IG  S K     F      S I +  +L+   ++ + + ++  
Sbjct: 198 ITSATCFLFPVAMWDLIIGSSSGKTSELPFSAWAFLSTIIFGIILIFYVDNIAEERLHMV 257

Query: 599 STWMVFGMIGGFCYIVIQLILIIDFA 676
            +     M+ G C IV++L   +DF+
Sbjct: 258 FSSPRHLMVAGVCIIVMELAYEMDFS 283


>At3g30710.1 68416.m03897 hypothetical protein similar to
           Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
           musculus}; similar to MRP homologs in mycobacteria
           (SP:P53382), which belong to the MR?/NBP35 family of
           ATP-binding proteins.
          Length = 523

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 182 CLFTMLFSMSILHQFHLLPSYVCTMLVLVTIVCCITLAPGLHNELQKLPFCTNA 343
           C+  ML+ ++      + P++VC +L L T    + +  G H  LQ     TNA
Sbjct: 117 CILEMLYCLAFAFP-QMCPNFVCHVLALYTRAREVNIEFGYHELLQLCQVKTNA 169


>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +1

Query: 619 NDWR--LLLHCYPTHSY 663
           N+WR  L LHCYP H Y
Sbjct: 121 NNWRDYLRLHCYPIHKY 137


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +2

Query: 233 LPSYVCTMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDEAVGY 412
           L SY  T+   + I+C ++L     +  ++    T  T     GLL G  +   D  V  
Sbjct: 552 LVSYEDTVPEKIRILCLLSLVALSQDRTRQPTVLTAVTSGGHRGLLSGLMQKAIDSVVCI 611

Query: 413 LAVYRITFATCLFFLLMALI 472
            + + + FA  L  L+  L+
Sbjct: 612 TSKWSLAFAEALLSLVTVLV 631


>At2g36190.1 68415.m04442 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:18324 from [Daucus carota]
          Length = 591

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 531 GPKTILNSALGSLEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQST 385
           GP  ++  A   LE+ TP+     +  K H   V++ +   P++  Q T
Sbjct: 448 GPFGLITLATPDLEEYTPVFFRVFNDTKTHKPKVLMCSDARPSSLKQDT 496


>At5g53620.2 68418.m06662 expressed protein
          Length = 682

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 256 HSAYIRREEV-ELVQDGHAEQHSEQAVLPQQHASCAAE 146
           HS  + ++E+ +LVQ     QH EQ+VL QQ A    +
Sbjct: 384 HSFVMHQQEISQLVQPQVPSQHIEQSVLLQQKAQAVPD 421


>At5g53620.1 68418.m06661 expressed protein
          Length = 682

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 256 HSAYIRREEV-ELVQDGHAEQHSEQAVLPQQHASCAAE 146
           HS  + ++E+ +LVQ     QH EQ+VL QQ A    +
Sbjct: 384 HSFVMHQQEISQLVQPQVPSQHIEQSVLLQQKAQAVPD 421


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 156 VLQNKGPTLHPFLVFNSHFVLIVLSVLCTTIYIPSNKYVYF 34
           +  ++  T+H  L+ ++ F+   L+ + T IY+    YVYF
Sbjct: 270 ITADESATVHVILLASAAFLSFALTGIVTEIYLDHIGYVYF 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,029
Number of Sequences: 28952
Number of extensions: 319943
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)