Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1026
         (374 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13345.2 68417.m02086 TMS membrane family protein / tumour di...    28   1.8  
At4g13345.1 68417.m02085 TMS membrane family protein / tumour di...    28   1.8  
At3g24460.1 68416.m03069 TMS membrane family protein / tumour di...    28   1.8  
At5g35460.1 68418.m04217 expressed protein                             26   9.4  

>At4g13345.2 68417.m02086 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 394

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 LFYIILNLTWNYYH*FKKWTVFV 360
           +++ +L + WN +H  KKWT+ V
Sbjct: 337 MYFAMLLVGWNIHHSMKKWTIDV 359


>At4g13345.1 68417.m02085 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 394

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 LFYIILNLTWNYYH*FKKWTVFV 360
           +++ +L + WN +H  KKWT+ V
Sbjct: 337 MYFAMLLVGWNIHHSMKKWTIDV 359


>At3g24460.1 68416.m03069 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 409

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 LFYIILNLTWNYYH*FKKWTVFV 360
           +++ +L + WN +H  KKWT+ V
Sbjct: 348 MYFAMLLIGWNTHHPMKKWTIDV 370


>At5g35460.1 68418.m04217 expressed protein
          Length = 381

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 295 FYII-LNLTWNYYH*FKKWTVFVILF 369
           FY+I + L W YY  FKKW  +++ F
Sbjct: 98  FYVIFVPLRWIYYR-FKKWHYYLLDF 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,678,982
Number of Sequences: 28952
Number of extensions: 64753
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)