Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1014
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   4.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.9  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 336 TRNTLYFNTIYSNY*NHQKYYS 401
           +  T++ N  Y+NY N + YY+
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYN 329


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 324 SYNSTRNTLYFNTIYSNY*NHQKYYSTWNFSST 422
           +Y+S  NTL +  + SN   + K+ +  N SST
Sbjct: 300 AYSSLENTLKYYEVGSNVPFNFKFITDANSSST 332


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 485 LVPVLLNNVINKCPAIMLAVNRT 417
           L+P +LNN  N+C +  + +  T
Sbjct: 56  LLPEVLNNHCNRCTSRQIGIANT 78


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 306 YKSHIYSYNSTRNTLYFNTIYSNY*NHQK--YYSTWN 410
           + ++ Y YN   N    N   +NY N+ K  YY+  N
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 297 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 398
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 297 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 398
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 324 SYNSTRNTLYFNTIYSNY 377
           S+  T N  YF+  Y NY
Sbjct: 209 SWRITHNFFYFDPRYGNY 226


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 297 N*KYKSHIYSYNSTRNTLYFNTIY 368
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 297 N*KYKSHIYSYNSTRNTLYFNTIY 368
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 297 N*KYKSHIYSYNSTRNTLYFNTIY 368
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 297 N*KYKSHIYSYNSTRNTLYFNTIY 368
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,503
Number of Sequences: 438
Number of extensions: 2268
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)