Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1006
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    46   3e-06
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.28 
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    29   0.49 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    29   0.49 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   3.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.5  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    25   6.0  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    25   6.0  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   6.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   7.9  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.9  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   7.9  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = +2

Query: 5   QFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEY 184
           QF WRPRPP+ L+             Y   F+ +D    S A++EL A+R + + ++ +Y
Sbjct: 619 QFIWRPRPPSPLTKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRELAARRRQLISEWQKY 678

Query: 185 RESKIQEWNEQK 220
           R+  I    E++
Sbjct: 679 RDEVIARVAEER 690


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +2

Query: 83  YYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELRDYVDK 256
           Y   F+ K+R     + KE+ AK T+Q +K TE   +   +  E++ + LE RDY  K
Sbjct: 226 YQFSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEERRKFLE-RDYAIK 282


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 321 TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 476
           +NR   +A    R    S GCD   N T PD     +Y + + TD  +L  F
Sbjct: 400 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 450


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 321 TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 476
           +NR   +A    R    S GCD   N T PD     +Y + + TD  +L  F
Sbjct: 320 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 370


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 354 ARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLFSTVTNE 494
           ARL++E  G D PE +   + +   T  +   +   + F+   VTN+
Sbjct: 111 ARLKAERNGEDFPEEQFDSNCITPGTTFMERVSRQLYYFIHKKVTND 157


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 518 CLSLSKNINYFDKLRHYNE 574
           CL+  KN +YF KL+ ++E
Sbjct: 118 CLNYEKNYDYFKKLKAFHE 136


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 182 YRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKR 295
           +RE  I EW +     L   D V++TV  R R +  KR
Sbjct: 201 FREEDIAEWMKSAGFGLVTLDRVNRTVDNRKRNLNMKR 238


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 122 SKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPR 226
           S A KE+V +  E+         S+I+ W E KP+
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQ 241


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 164 MKKFTEYRESKIQEWNEQKPRRLEL 238
           MKKF+E     I EW E + R LE+
Sbjct: 352 MKKFSESPIEFINEWIESQSRDLEI 376


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 474 TETNADDQLTSLKCMFNYLKNPVLSGS-RGGRSLLTPT 364
           TET  DD   S K    Y+K+ +++ S +GG S +  T
Sbjct: 124 TETQFDDDRDSTKLSSEYVKDDIVNKSTKGGVSPIKET 161


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 492 RL*RLKTETNADDQLTSLKCMFNYLKNPVLSGSRGGRSLLTPTSNVRS 349
           RL +LK   N   +  S K      KNP  S ++  +S  + +SN+ S
Sbjct: 58  RLEKLKLRKNGVRKSNSEKPSVGIEKNPSFSTTKSAKSFSSTSSNIDS 105


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 119 SSKASKELVAKRTEQMKKFTEYRESKIQEWNE-QKPRRLELRD 244
           SS  +    +  TEQ + F EY++  +++  + +K RR E  D
Sbjct: 289 SSHPAFNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALD 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,362
Number of Sequences: 5004
Number of extensions: 30827
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)