Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1006
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    46   3e-05
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    29   2.0  
03_03_0278 - 16126803-16129049                                         29   2.7  
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310...    28   4.6  
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397...    28   4.6  

>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 23/80 (28%), Positives = 42/80 (52%)
 Frame = +2

Query: 5   QFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEY 184
           QF WRPRPP+LL+             Y  ++E +D+   ++ S++   +R +  +++  +
Sbjct: 606 QFLWRPRPPSLLTPEKEDEIAKNLRKYSKKYEQEDQDAFNQLSEQERKRRKQLQEEWEGW 665

Query: 185 RESKIQEWNEQKPRRLELRD 244
                Q   E++P R+ELRD
Sbjct: 666 VAKWKQLHEEERPYRMELRD 685


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 89  SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 217
           SQ    +     ++S   ++K  E   KF E +E K+QEW  Q
Sbjct: 255 SQLLDNNTATMKESSSTDISKSVENYNKFKEEQELKLQEWLRQ 297


>03_03_0278 - 16126803-16129049
          Length = 748

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 8   FHWRPRPPTLLSXXXXXXXXXXXXXYYSQFES--KDRMRSSKASKELVAKRTEQMKKFTE 181
           F W+PRPPT +S                + +S  KD+++  +  +  VA   ++ KK   
Sbjct: 401 FSWKPRPPTRISLVKTFTQFDVRGILMEKAKSDLKDKLKEMQTKRSQVAANGKKNKK-NM 459

Query: 182 YRES 193
           ++ES
Sbjct: 460 FKES 463


>08_01_0353 -
           3107628-3107774,3108177-3108213,3108248-3109164,
           3109210-3110952
          Length = 947

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 107 DRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLE 235
           D   S +  ++++ +  +++ +  E R  +++EW EQK  RLE
Sbjct: 11  DEEESERRRQKMIEEEKKRLDEEMELRRRRVKEWQEQK--RLE 51


>07_03_1392 -
           26238885-26239007,26239137-26239235,26239636-26239720,
           26239825-26240028,26240360-26240682,26241904-26242575
          Length = 501

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 95  FESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLE 235
           ++ + R  +  A+K   A+R   MK   E  E K+Q   EQK R  E
Sbjct: 448 YDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQKKRAQE 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,481
Number of Sequences: 37544
Number of extensions: 185274
Number of successful extensions: 520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)