Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1006
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   3e-15
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 30   1.6  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     28   4.8  
SB_1030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_54262| Best HMM Match : CXC (HMM E-Value=5)                         28   6.3  
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    27   8.3  

>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 39/83 (46%), Positives = 50/83 (60%)
 Frame = +2

Query: 5   QFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEY 184
           QF WRPRP TLL              Y   FE KDRM  S+ASKEL+ +R  +MK+F  Y
Sbjct: 479 QFLWRPRPATLLDEDAIKKLKKDIKKYQRTFEIKDRMSQSRASKELIERRRRKMKEFEGY 538

Query: 185 RESKIQEWNEQKPRRLELRDYVD 253
           R+ K  E+ +QK +RLELR+ +D
Sbjct: 539 RQKKSNEFIQQKKQRLELRNGLD 561


>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 101 SKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELR 241
           S D    S ASK+    + E+ K+  E RE + +EW E K +  E R
Sbjct: 701 SLDHAWKSTASKQSGEDKREREKREREIREREEREWEENKRKHEEAR 747


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 98   ESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLE 235
            E+++ +R  +  +E      EQM+K  E RE K+QE  E++ R+ E
Sbjct: 1261 EAEEELRRLQEEREY----REQMRKIAEARERKLQEEEEERRRQEE 1302


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 104 KDRMRSSKASKEL---VAKRTEQMKKFTEYRESKIQEWNEQK 220
           +  +RSSK  +EL   +AKR  QM++  E RE+  + + E+K
Sbjct: 5   ESELRSSKTIEELRFEMAKRNTQMQEIEEERETLKKFYEEEK 46


>SB_1030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 146 AKRTEQMKKFTEYRESKIQEWNEQKPRRLELRDYVD 253
           A+RTEQ  +F     + I  W   + RRL   DY +
Sbjct: 19  ARRTEQRNRFNSVGVTPIYTWITYEGRRLYCPDYTE 54


>SB_54262| Best HMM Match : CXC (HMM E-Value=5)
          Length = 95

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 146 AKRTEQMKKFTEYRESKIQEWNEQKPRRLELRDYVD 253
           A+RTEQ  +F     + I  W   + RRL   DY +
Sbjct: 19  ARRTEQRNRFNSVGVTPIYTWITYEGRRLYCPDYTE 54


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 267 HGCGEYSRRGY*IFRERGTNRHRVV 341
           HGCG YS + Y   R RG  R++++
Sbjct: 526 HGCGTYSYQAYRYRRPRGGARYQLL 550


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,127,956
Number of Sequences: 59808
Number of extensions: 233854
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)